DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and LOC3292147

DIOPT Version :10

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_554155.4 Gene:LOC3292147 / 3292147 VectorBaseID:AGAMI1_008878 Length:1474 Species:Anopheles gambiae


Alignment Length:1501 Identity:632/1501 - (42%)
Similarity:859/1501 - (57%) Gaps:288/1501 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LLLLLAGLNGLTQVGALKGENPRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTD 134
            |||:|..:..|        :||||||||:|||||:::|.|.||:|||.|.|||||:|||..||..
Mosquito    64 LLLVLHAVEAL--------QNPRIIEHPIDTTVPRHEPATLNCKAEGIPQPTIQWYKDGAPLKIL 120

  Fly   135 TGSHRIMLPAGGLFFLKVIHSRRESDAGTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTR 199
            .|||||.|||||||||||::||||||||.|||||:||.|:|||||||||||.||:||||||.:||
Mosquito   121 QGSHRIALPAGGLFFLKVVNSRRESDAGVYWCEARNENGIARSRNATLQVAVLREEFRLEPQHTR 185

  Fly   200 VAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVK 264
            |||||..|:|||.|:|.|||.:.||||||.|.:..:||||||||||||||:.||:|:|:|||:.|
Mosquito   186 VAQGETVLLECGPPKGIPEPTLWWRKNGQKLEVEASKRIRIVDGGNLAIQDVRQTDEGQYQCIAK 250

  Fly   265 NVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLWRRTASGGNMPLRR 329
            |:||.||||||||||||:|||||||.:||.|.|:||.||||:||||:|||||||:||||||||.|
Mosquito   251 NLVGVRESATAFLKVHVKPFLIRGPHDQTVVEGTSVTFQCRVGGDPMPDVLWRRSASGGNMPLNR 315

  Fly   330 VHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGITATGILTVHAPPKFVIRPKNQLVEIGDEVLFE 394
            ||:||||||:|:||.|:|.|||:||||||||.|:|||.||||:||...|||..|:||...:|.||
Mosquito   316 VHILEDRSLRLEDVVLDDEGEYSCEADNAVGAISATGTLTVHSPPHLSIRPVPQVVEAPHDVSFE 380

  Fly   395 CQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAV 459
            |::.|.|:||.:||:|||.:|:.||....|.|.|.|.|..:||::.:..:.|:|.|:.|:|:|:|
Mosquito   381 CKSEGRPKPTTFWSIEGNRTLIFPGTSIDRFETTYTQESLTVLTLTQTTKSDNGLVIVCSAVNSV 445

  Fly   460 GSVSSRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEH 524
            ||||.|..:.|.:|.:.|||||..||.|||||.||.|.:.|..:|.|.|.:||||||.|  |...
Mosquito   446 GSVSVRARLMVASQDDRPPPIIILGPTNQTLPSKSTVSMACNAVGNPNPFISWYLDGNP--VVPS 508

  Fly   525 ERRNLSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTYPG 589
            ||.|:::.|.|.:.:|::..|:||||||||:|:|||:||.:||:::|||||:.|:||||.|.:|.
Mosquito   509 ERINITENGTLLLRELEKGTDQGLYTCVASSRSGKSTWSAFLRVESPTNPNVNFYRAPEPSEFPS 573

  Fly   590 PPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMFGKNETDGWVAVGTRVQNTTFTQTGLLP 654
            .|||||:|....:|:|:||..|.|.|.|.:.||:||:|..:...||..|..:|.:|:::.:.:.|
Mosquito   574 APGKPQIVNISNSSITISWLPSIKSGASDINGYLIEVFSSDMAKGWTTVPFKVSSTSYSYSPISP 638

  Fly   655 GVNYFFLIRAENSHGLSLPSPMSEPITVGTRYFNSG--LDLSEARASLLSGDVVELSNASVVDST 717
            .|:|.|::||||..||.:||.||:|:::| |.||.|  ::||||:|:|.||.||.|..|:..|:|
Mosquito   639 NVSYIFIVRAENDQGLGIPSLMSDPVSIG-REFNHGEDINLSEAQATLSSGQVVNLLEANATDAT 702

  Fly   718 SMKLTWQIINGKYVEGFYVYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPN 782
            |::|.|:|:||:||||||:|:|:     ||:                                  
Mosquito   703 SVRLAWEIVNGQYVEGFYIYSRK-----VNS---------------------------------- 728

  Fly   783 IAAAGKRDGETNQSGGGAPTPLNTKYRMLTILNGGGASSCTITGLVQYTLYEFFIVPFYKSVEGK 847
                                  |..||.||:|:|||||:|||.||.::|.||||:|||||:::|:
Mosquito   729 ----------------------NGTYRTLTVLHGGGASACTINGLEKFTEYEFFLVPFYKTIQGR 771

  Fly   848 PSNSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPELKDRHGVLLNYHVIVRGIDTAHNFSR 912
            |||||...||||||:.:|..:||:|||:|||:|||:.|.....:|.|.:||:|:||.| .||.|:
Mosquito   772 PSNSRSTCTLEDVPTASPVNLEAVLLNTSAVYLKWEPPSNSTINGKLKHYHIIIRGYD-VHNISK 835

  Fly   913 ILTNVTIDAASPTLVLANLTEGVMYTVGVAAGNNAGVGPYCVPATLRLDPITKRLDPFINQRYPI 977
            :|||:|:|..:|.|:||||:.||.|:|.:||....|:|||.:|:.|||||.|:|||.... ||||
Mosquito   836 VLTNMTVDGEAPKLLLANLSAGVTYSVSIAASTKVGIGPYSIPSILRLDPHTRRLDHGYT-RYPI 899

  Fly   978 NQDHVNDVLTQPWFIILLGAILAVLMLSFGAMVFVKRKHMMMKQSALNTMRGNHT-SDVLKMPSL 1041
            |.|:.:|:|||.|||||||:|:|:::..|||:: :.|:...||.|:||.|.|||. ..|.|.|:|
Mosquito   900 NHDYSHDILTQTWFIILLGSIIAIIVFLFGAII-IFRRIQFMKHSSLNNMHGNHAIGTVRKFPTL 963

  Fly  1042 SARNGNGYWLDSSTGGMVWRPSPGGDSLEMQKDHIADYAPVCGAPGSPAGGGTSSGGSGGAGSGA 1106
            .. |.||.|:|  .||.|||     .:.::.|:.|.|||.|..||..|                 
Mosquito   964 PL-NPNGVWID--PGGGVWR-----QASDITKEVITDYAQVSVAPTLP----------------- 1003

  Fly  1107 SGGDDIHGGHGSERNQQRYVGEYS-----NIPTDYAEV---SSF----GKAPSEYGRHGNASPAP 1159
                               :.:|.     |:| |||||   |||    |::...|..:|     .
Mosquito  1004 -------------------LPDYERLSPLNMP-DYAEVAGCSSFKNDLGQSDPCYDNYG-----A 1043

  Fly  1160 YATSSILSPHQQ----------------------------------QQQQQPRYQQRPVPGYGLQ 1190
            ||:::::....|                                  .||.|.|:||:....|||.
Mosquito  1044 YASTTLVGRSVQLYAQNQFDGKNVYSAPTVVTAAAASGGCHYNNFINQQHQQRHQQQLQAQYGLH 1108

  Fly  1191 RP--MHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIYQQMSTTSEIYPTNTGPSRSVYSEQ 1253
            .|  ||...|.|.||||                    ..::.:....:...|...|...|:    
Mosquito  1109 GPQQMHAQIQSQPHQQQ--------------------IGVHDKRERDANGRPIGGGGGGSI---- 1149

  Fly  1254 YYYPKDKQRHIHITENK-------LSNCHTYEAAPGAKQSS--PISSQF--ASVRRQQLPPNCSI 1307
                  |.:.::|.||:       |:.|.:  :.|.|..|:  .:.|.:  ::|.......:||:
Mosquito  1150 ------KSQKMNIIENRMADMLNNLNQCSS--SGPTASYSTGGGMGSSYGGSTVSNLNSGSHCSL 1206

  Fly  1308 ---GRESARFKVLNTDQGKNQQNLLDLDGSSMCYNGLADSGCGGSPSPMAMLMSHEDEHALYHTA 1369
               |:..|....|..|.      :..:.||:....|...   |||.|                  
Mosquito  1207 LPAGQPMAASSTLTMDV------MNSMSGSAPGSGGAIG---GGSSS------------------ 1244

  Fly  1370 DGDLDDMERLYVKVDEQQPPQQQQQLIPLVPQHPAEGHLQSWRNQSTRSSRKNGQECIKEPSELI 1434
                                         ||..|..|.:     :.|....|.|   ..:.::|.
Mosquito  1245 -----------------------------VPHTPLFGTI-----KRTTKYNKIG---YNKDNKLN 1272

  Fly  1435 YAPGSVASERSLLSNSG-SGT-SSQPAGHNVXPLLPGSSLGQSQSKSQSQSQSQSDLQSQEQLYA 1497
            :.....:.|:.|...|. .|| ||.|:...: .....:.:..|..:.|.|.|.|...|.|:|.:.
Mosquito  1273 FGDNGRSVEQPLFVKSKYDGTWSSVPSSVTMASAASSNMINNSPYQQQHQQQQQQQQQQQQQKHQ 1337

  Fly  1498 REVREL 1503
            ::.:.|
Mosquito  1338 QQQQHL 1343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 IgC_1_Robo 91..185 CDD:409490 71/93 (76%)
Ig strand A 91..95 CDD:409490 3/3 (100%)
Ig strand A' 98..103 CDD:409490 3/4 (75%)
Ig strand B 107..115 CDD:409490 4/7 (57%)
Ig strand C 121..126 CDD:409490 4/4 (100%)
Ig strand C' 129..131 CDD:409490 0/1 (0%)
Ig strand D 139..142 CDD:409490 2/2 (100%)
Ig strand E 145..151 CDD:409490 5/5 (100%)
Ig strand F 162..170 CDD:409490 6/7 (86%)
Ig strand G 173..185 CDD:409490 10/11 (91%)
IgI_2_Robo 192..279 CDD:409389 60/86 (70%)
Ig strand A 192..195 CDD:409389 2/2 (100%)
Ig strand A' 197..201 CDD:409389 2/3 (67%)
Ig strand B 205..212 CDD:409389 3/6 (50%)
Ig strand C 220..225 CDD:409389 1/4 (25%)
Ig strand C' 227..230 CDD:409389 2/2 (100%)
Ig strand D 237..241 CDD:409389 3/3 (100%)
Ig strand E 244..250 CDD:409389 5/5 (100%)
Ig strand F 257..265 CDD:409389 4/7 (57%)
Ig strand G 268..279 CDD:409389 9/10 (90%)
Ig 286..370 CDD:472250 63/83 (76%)
Ig strand B 300..304 CDD:409353 2/3 (67%)
Ig strand C 313..317 CDD:409353 3/3 (100%)
Ig strand E 336..340 CDD:409353 3/3 (100%)
Ig strand F 350..355 CDD:409353 3/4 (75%)
Ig strand G 363..366 CDD:409353 1/2 (50%)
Ig_3 373..457 CDD:464046 36/83 (43%)
Ig 480..566 CDD:472250 45/85 (53%)
Ig strand B 496..500 CDD:409353 1/3 (33%)
Ig strand C 509..513 CDD:409353 1/3 (33%)
Ig strand E 533..537 CDD:409353 2/3 (67%)
Ig strand F 548..553 CDD:409353 4/4 (100%)
Ig strand G 561..564 CDD:409353 1/2 (50%)
COG3979 586..>800 CDD:443178 75/215 (35%)
FN3 588..681 CDD:238020 40/92 (43%)
fn3 864..952 CDD:394996 43/87 (49%)
LOC3292147XP_554155.4 None

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