DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo2 and boi

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_001096868.3 Gene:boi / 31229 FlyBaseID:FBgn0040388 Length:1105 Species:Drosophila melanogaster


Alignment Length:1410 Identity:288/1410 - (20%)
Similarity:440/1410 - (31%) Gaps:534/1410 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PMDTTVPKNDPFTFNCQAEGNPTPTIQW-FKDGRE------LKTDTGSHRIMLPAGGLFFLKVIH 154
            |.....||.|...|.|:....| ..::| |:.|..      |:...| :.:...:.||.:...|:
  Fly    42 PESAVAPKGDEVVFECELNLKP-DRLEWRFRRGDSSEPYLYLRPSAG-YNVTSGSDGLAWRLRIY 104

  Fly   155 SRRESDAGTYWCEAKNEFGVARSRNATLQVAFL-----------RDEFRLEPANTRVAQGEVALM 208
            ...:: ||.|.|.|....|...|..|.|.:..:           |...|..     ||.....|:
  Fly   105 VSAQT-AGDYQCVAWYGPGALASTPARLALVSIALDVGQGSMGARSSIRWS-----VAPKNCLLI 163

  Fly   209 ECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDG--GNLAIQEARQSDDGRYQCVVKN-VVG-- 268
            .||:...:|....|:.:||:.|     .:..::.|  |.|.:......|.|.|.||..| :.|  
  Fly   164 RCGSVISNPPAIWSFYRNGKKL-----PQSELLPGAAGALVLDTVTAKDAGNYSCVATNSITGDE 223

  Fly   269 TRESATAFLKVHVRP-----FLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLWRRTASGGNMPLR 328
            .|...|..|:|....     ||.|.|...:|..|.:||.:|...|.|.|.|:|    |..|:   
  Fly   224 LRLPQTIELRVDYTDRTPPYFLQRPPIEYSARPGETVVLECPGVGSPRPRVIW----SSPNV--- 281

  Fly   329 RVHVLEDRS------LKLDDVTLEDMGEYTCEADNAVG-GITATGILTVHAPPKFVIRPKNQLVE 386
             |.:..:||      |::.||..||.|.|.|..||.:. .|..|..|:|...|..:..|...|..
  Fly   282 -VEIYNNRSTILSYGLQITDVKPEDQGSYICMLDNGIAPPIDHTIKLSVLQRPTILRGPAATLTN 345

  Fly   387 IGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPE----GRSVLSIARFAREDS 447
            ..:.:|.:|.|:|:|:|.:||.:.|.             :.|..||    .|| |.:.|..:..:
  Fly   346 ESNPLLLDCSASGNPQPDIYWLINGE-------------DATKDPEAVVDNRS-LQLKRVQKRHA 396

  Fly   448 GKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPCRTLGTPVPQVSW 512
            | ||.|.|.|.:|..|...::.|:       |:...|..::  |:..:.|.|.            
  Fly   397 G-VVQCFAKNILGETSEGNILRVN-------PLEITGEDDE--PLGEVPVWPV------------ 439

  Fly   513 YLDGIPIDVQEHERRNLSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIK 577
                       ||    |:.|..|                :|...|..:.||..:          
  Fly   440 -----------HE----SNTGMGT----------------SSTSGGSKNKSGRRK---------- 463

  Fly   578 FFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMF---------GKNETD 633
             |:|..:     ||.:|.:....:.||.|.|:    |..:|  |..|..|         |||...
  Fly   464 -FKASMV-----PPSRPNVTRLSDESVMLRWS----VPQNS--GLQITFFKVQYRMLGDGKNRRK 516

  Fly   634 GW--------------------------------VAVGTRVQNTTFTQTGLLPGVNYFFLIRA-- 664
            .|                                ..:|...:|.|.:.|||..|..|.|.|.|  
  Fly   517 NWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREYEMGNPPKNFTSSVTGLTAGKYYRFRIVAVY 581

  Fly   665 ---ENSHGLSLPSPMSEPITVGTRYF------NSGLDLSEARASLLSGDVVELSNASVVDSTSMK 720
               :|..|           ....::|      .|.|.:.|.|      :|..||.::||      
  Fly   582 SNNDNKEG-----------NTSLKFFLQNGTSKSNLPVPELR------EVETLSESAVV------ 623

  Fly   721 LTWQIIN---GKYVEGFYVYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPN 782
            |.|.:::   .:.::|:|.|.|                            .|.::|..|.:|   
  Fly   624 LHWSLVSSTQNEDIDGYYAYYR----------------------------PADSAAEYLKAT--- 657

  Fly   783 IAAAGKRDGETNQSGGGAPTPLNTKYRMLTILNGGGASSCTITGLVQYTLYEFFIVPFYKSVEGK 847
                                           ::||.:.|..|..|...|.|||.:..|......:
  Fly   658 -------------------------------VDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASE 691

  Fly   848 PSNSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPELKDRH--------------GVLLNYH 898
            .|..|.|||.:  ..|.|       .:|||..:  .|.:..::|              |:||   
  Fly   692 FSAIRQARTRK--THEQP-------ASSSATPV--PANKAVEQHQNSLYPLIAGAAGGGILL--- 742

  Fly   899 VIVRGIDTAHNFSRILTNVTIDAASPTL--VLAN-LTEGVMYTVGVAAGNNAGVGPYCVPATLRL 960
             ::..:.......|...:...|...|.|  :.|: :|..|:   ||...:.:|       ...||
  Fly   743 -LIASLVVCLCLKRRENSQPEDENKPQLEHIQADFVTSAVL---GVGGHHKSG-------DVRRL 796

  Fly   961 DPITKRLDPFINQRYPINQDHVNDVLTQPWFIILLGAILAVLMLSFGAMVFVKRKHMMMKQSALN 1025
            :.:..|::...|   |:.|:..:|                            |.:::|       
  Fly   797 NGVIPRMNITPN---PLAQETASD----------------------------KNRNVM------- 823

  Fly  1026 TMRGNHTSDVLKMPSLSARNGNG------YWLDSSTG-------------GMVWRPSPGGDSLE- 1070
                    ::..:|.|:..||||      ..|:.|..             |:....|...::|| 
  Fly   824 --------ELRFLPPLANGNGNGNCMARDLALERSNAEEQQDEDGHEDEKGLPAVASSSCETLEA 880

  Fly  1071 --------MQKDHIADY--AP--VCGAPGSPAGGGTSSGGSGGAGSGASGGDDIHGGHGSERNQQ 1123
                    :.:.|..:.  ||  |..||..|. .......:.|||...||   :|      :|..
  Fly   881 CDAAIKLNLPQKHDQEQLDAPNAVLEAPSKPL-PPLPKKPANGAGQNNSG---LH------QNGL 935

  Fly  1124 RYVGEY--SNIPT------DYAEVSSFGKAPSEYGRHGNASPAPYATSSILSPHQQQQQQQPRYQ 1180
            .:...|  ...||      ||               |....|.|        ||....||.|.:|
  Fly   936 HHAQPYHPPGTPTLMHKRLDY---------------HQQPPPVP--------PHSAYYQQAPTHQ 977

  Fly  1181 QRPVPGYGLQRPMHPHYQ-------------------QQQHQQQQAQQTHQQHQAL--------Q 1218
            ..|:    ::|.:..|.|                   ::|.:....||.|..|..|        .
  Fly   978 PSPM----MERSVRGHQQPGGFHMEEGTPTPTRIPSLRRQRRTSGNQQVHNSHSNLNIGLSHHNN 1038

  Fly  1219 QHQQLPPSNIYQQMSTTSEIYPTNTGPSRSVYSEQYYYPKDKQRHIHITENKLSNCHTYEAAPGA 1283
            .:..|||                                    .|.|:        |.:...||.
  Fly  1039 NNNNLPP------------------------------------HHQHL--------HHHPGHPGG 1059

  Fly  1284 KQSSPISSQFASVRRQQLPPNCSIGRESARFKVLNTDQGKNQQNL 1328
            ....||......|:|..:|....|.|         |..|.:..|:
  Fly  1060 LVGIPIVPGSPRVQRSPMPSRAMIKR---------TRLGSHTDNI 1095

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 24/94 (26%)
I-set 91..184 CDD:254352 24/93 (26%)
I-set 190..279 CDD:254352 24/93 (26%)
Ig2_Robo 193..279 CDD:143201 23/90 (26%)
I-set 283..370 CDD:254352 32/98 (33%)
Ig 300..370 CDD:299845 26/76 (34%)
Ig 388..>457 CDD:299845 21/72 (29%)
I-set 479..561 CDD:254352 12/81 (15%)
Ig 496..561 CDD:143165 9/64 (14%)
FN3 588..681 CDD:238020 29/138 (21%)
FN3 <817..856 CDD:238020 12/38 (32%)
fn3 864..952 CDD:278470 19/104 (18%)
boiNP_001096868.3 IG_like 42..131 CDD:214653 23/91 (25%)
IG_like 154..234 CDD:214653 23/89 (26%)
Ig 172..234 CDD:299845 18/66 (27%)
IG_like 249..329 CDD:214653 29/87 (33%)
Ig 257..329 CDD:299845 27/79 (34%)
IG_like 339..418 CDD:214653 26/93 (28%)
Ig 352..408 CDD:299845 21/70 (30%)
FN3 470..592 CDD:238020 29/138 (21%)
FN3 613..700 CDD:238020 28/154 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452285
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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