DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo2 and Igdcc3

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_001344186.1 Gene:Igdcc3 / 19289 MGIID:1202390 Length:813 Species:Mus musculus


Alignment Length:799 Identity:200/799 - (25%)
Similarity:280/799 - (35%) Gaps:242/799 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 PLLLLL---------AGLNGLTQVGALKGENPRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQW 124
            ||||||         .||....:: |...|       |.|.......|....|:.||.|...:.|
Mouse    31 PLLLLLLLLPLPAPSLGLGHSAEL-AFSVE-------PNDDIANPGQPIVLGCKVEGTPPVQVSW 87

  Fly   125 FKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRE-----SDAGTYWCEAKNEFGVARSRNATLQV 184
            .|:|.||  ..|:|..:|..|.|.   :.|.|.|     ||.|.|.|.|:|.||:..||.|.||.
Mouse    88 RKNGAEL--PEGTHTTLLANGSLL---IHHFRLEQGGSPSDEGDYECVAQNRFGLLVSRKARLQA 147

  Fly   185 AFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQ 249
            |.:.| |.:.|......:|.||..:|.. .|.|:|.|:|.||...:: ..::|..::..|.|.|.
Mouse   148 ATMSD-FHVHPQAVTGEEGGVARFQCQI-HGLPKPLITWEKNRVPID-TDDERYTLLPKGVLQIT 209

  Fly   250 EARQSDDGRYQCVVKNVVGTRESATAFLKV-------HVRPFLIRGPQNQTAVVGSSVVFQCRIG 307
            ..|..|.|.:.||..|:...|.|..|.|.|       :..|.::.||:|.|..|..:.|.:|...
Mouse   210 GLRAEDSGIFHCVASNIASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVAT 274

  Fly   308 GDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGI--TATGILTV 370
            |:|.|.|.|.| ..|..:.:..:.||...:|.:.|||::..|.|.|.|:.....:  ||.|.|.|
Mouse   275 GNPRPIVSWSR-LDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVV 338

  Fly   371 HAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRS 435
            .||.:||..|::.....|...:|.|||.|.|.|.:.|...|                        
Mouse   339 QAPAEFVQHPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNG------------------------ 379

  Fly   436 VLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPC 500
                              ..|.|.|.|..:.                   .|.||          
Mouse   380 ------------------QVLGAGGHVRLKN-------------------NNSTL---------- 397

  Fly   501 RTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGY 565
                                       ::|..|.         |||.:|.|||.|..|.|..|..
Mouse   398 ---------------------------SISGVGP---------EDEAIYQCVAENIAGSSQASAR 426

  Fly   566 LRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMFGKN 630
            |.:          ..|..|   ||||...:.|......|.:||:.. ......::|||:.: .|.
Mouse   427 LTV----------LWAEGL---PGPPRNVRAVSVSSTEVRVSWSEP-LAHTKEIIGYVLHI-RKA 476

  Fly   631 ETDGWVAVGTRVQNTTFTQ--TGLLPGVNYFFLIRAENSHGLSLPS-----------PMSEPITV 682
            .....:.....|..:||..  ..|.|...|.|.|:|....|.||.|           |:..|::|
Mouse   477 ADSPKLEYQEAVSKSTFQHLVRDLEPSTAYSFYIKAYTPRGASLASVPTLASTLGEAPVPPPLSV 541

  Fly   683 GTRYFNSGLDLSEARASLLSGDVVELSNASVVDSTSMKLTWQ------IINGKYVEGFYVYARQL 741
                                         .::.|:|::|.|:      ..||    ||.::.|  
Mouse   542 -----------------------------RLLGSSSLQLLWKPWPRLAQHNG----GFKLFYR-- 571

  Fly   742 PNPIVNNPAPVTSNTNPLL--GSTSTSASASASASALISTKPNIAAAGKRDGETNQSGGGAPTPL 804
                   |...||.|.|:|  |:.|:...:....|.:...|  :.|       .||.|.|     
Mouse   572 -------PVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVK--LLA-------YNQHGDG----- 615

  Fly   805 NTKYRMLTILNGGGASSCT 823
            |...|.:::   .|||..|
Mouse   616 NATVRFVSL---KGASERT 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 34/99 (34%)
I-set 91..184 CDD:254352 33/97 (34%)
I-set 190..279 CDD:254352 27/88 (31%)
Ig2_Robo 193..279 CDD:143201 26/85 (31%)
I-set 283..370 CDD:254352 29/88 (33%)
Ig 300..370 CDD:299845 23/71 (32%)
Ig 388..>457 CDD:299845 10/68 (15%)
I-set 479..561 CDD:254352 14/81 (17%)
Ig 496..561 CDD:143165 11/64 (17%)
FN3 588..681 CDD:238020 27/105 (26%)
FN3 <817..856 CDD:238020 4/7 (57%)
fn3 864..952 CDD:278470
Igdcc3NP_001344186.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Ig 56..147 CDD:325142 34/102 (33%)
Ig 158..239 CDD:325142 25/82 (30%)
Ig_3 250..321 CDD:316449 24/71 (34%)
I-set 343..429 CDD:254352 34/192 (18%)
FN3 436..529 CDD:238020 25/94 (27%)
fn3 <556..615 CDD:306538 19/80 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..724
DNA_pol3_gamma3 <690..>812 CDD:331207
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 775..813
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.