DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo2 and Ncam2

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_001106679.1 Gene:Ncam2 / 17968 MGIID:97282 Length:837 Species:Mus musculus


Alignment Length:605 Identity:143/605 - (23%)
Similarity:236/605 - (39%) Gaps:83/605 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 FNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRESDAGTYWCEAKNEFGV 174
            |.|.|.|.| .:|.|:....|....|  .|:||...|:.....|::....|||.|.|:|.:..|.
Mouse    40 FTCTAIGEP-ESIDWYNPQGEKIIST--QRVMLQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 101

  Fly   175 ARSRNATLQVAFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIR 239
            .:.....|:: :.:..||...:.....|||.|.:.|.. ..||.|.:||..:.:.:..:.:.|..
Mouse   102 TQEATVVLEI-Y
QKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTIPDNRFA 164

  Fly   240 IVDGGNLAIQEARQSDDGRYQCVVK-NVVGTRESATAFLKVHVRPFLIRGPQ---NQTAVVGSSV 300
            ::...||.|....:||:|.|:|..: ...|..:.....:.|:|.|.::. ||   |.||..|..:
Mouse   165 VLANNNLQILNINKSDEGIYRCEGRVEAR
GEIDFRDIIVIVNVPPAIMM-PQKSFNATAERGEEM 228

  Fly   301 VFQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLE--DRSLKLDDVTLEDMGEYTCEADNAVGGIT 363
            ...|:..|.|.|.:.|.|  :|..:.....::|:  :..|.:.::..:|.|.|.|:|.|..|...
Mouse   229 TLTCKASGSPDPTISWFR--NGKLIEENEKYILKGSNTELTVRNIINKDGGSYVCKATNKAGEDQ 291

  Fly   364 ATGILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWS--------VEGNSSLLLPGY 420
            ....|.|...| .:::.||:.......|...|:|.|.|.|.:.|.        .||:.|      
Mouse   292 KQAFLQVFVQP-HILQLKNETTSENGHVTLVCEAEGEPVPEITWKRAIDGVMFSEGDKS------ 349

  Fly   421 RDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQGP 485
            .|||:||. ...|||.|.|......|||: ..|.|.:.:|....    |:....|..|..:.   
Mouse   350 PDGRIEVK-GQHGRSSLHIRDVKLSDSGR-YDCEAASRIGGHQR----SMHLDI
EYAPKFVS--- 405

  Fly   486 VNQTL-------PVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRH 543
             |||:       |:.    :.|.....|...:.|..:.:.:..:..........|...|.::...
Mouse   406 -NQTMYYSWEGNPIN----ISCDVTANPPASIHWRREKLLLPAKNTTHLKTHSVGRKMILEIAPT 465

  Fly   544 EDE--GLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENSVTL 606
            .|.  |.|.|.|:||.| :.:..|:.               ||:..|..|...:::|..:.:..:
Mouse   466 SDNDFGRYNCTATNRIG-TRFQEYIL---------------ELADVPSSPHGVKIIELSQTTAKI 514

  Fly   607 SWTRSNKVGGSSLVGYVIEMFGKNETDGWVAVGTRVQNTTFTQTGLLPGVNYFFLIRAENSHG-- 669
            |:.:....||..:..|.::: .:..::.|..|.:....|....:.|.|...|...:.|.|..|  
Mouse   515 SFNKPESHGGVPIHHYQVDV-KEVASETWKIVRSHGVQTMVVLSSLEPNTTYEIRVAAVNGKGQG 578

  Fly   670 ------------LSLPSPMS 677
                        :..|||.|
Mouse   579 DYSKIEIFQTLPVREPSPPS 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 22/74 (30%)
I-set 91..184 CDD:254352 22/73 (30%)
I-set 190..279 CDD:254352 22/89 (25%)
Ig2_Robo 193..279 CDD:143201 20/86 (23%)
I-set 283..370 CDD:254352 24/91 (26%)
Ig 300..370 CDD:299845 17/71 (24%)
Ig 388..>457 CDD:299845 25/76 (33%)
I-set 479..561 CDD:254352 17/90 (19%)
Ig 496..561 CDD:143165 13/66 (20%)
FN3 588..681 CDD:238020 20/104 (19%)
FN3 <817..856 CDD:238020
fn3 864..952 CDD:278470
Ncam2NP_001106679.1 Ig1_NCAM-2 21..112 CDD:143274 22/75 (29%)
I-set 22..111 CDD:254352 22/73 (30%)
I-set 117..193 CDD:254352 21/76 (28%)
IGc2 128..189 CDD:197706 19/61 (31%)
Ig 208..301 CDD:299845 25/95 (26%)
I-set 215..298 CDD:254352 22/84 (26%)
Ig 300..397 CDD:299845 30/109 (28%)
IG_like 308..395 CDD:214653 29/98 (30%)
IG_like 413..491 CDD:214653 15/97 (15%)
IGc2 414..482 CDD:197706 13/71 (18%)
FN3 496..588 CDD:238020 16/92 (17%)
fn3 594..678 CDD:278470 4/5 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 764..810
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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