DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo2 and Myom1

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_034997.2 Gene:Myom1 / 17929 MGIID:1341430 Length:1667 Species:Mus musculus


Alignment Length:1060 Identity:226/1060 - (21%)
Similarity:367/1060 - (34%) Gaps:364/1060 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 RRESD------AGTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQG-EVA------- 206
            |:||:      |.:|..:|...:.:..|                  :::|.:|| ||:       
Mouse    55 RQESEAFSQASATSYQQQASQTYSLGAS------------------SSSRHSQGSEVSRKTASAY 101

  Fly   207 -------------LMECGAPRGSPEPQISWR---KNGQTLNLVGNKRIRIVDGGNLAIQEARQSD 255
                         |:|..:.:.||:.:.:.|   ...:|.:|.||..:.|..|..:.|...|.|:
Mouse   102 DYGYSHGLTDSSLLLEDYSSKLSPQTKRAKRSLLSGEETGSLPGNYLVPIYSGRQVHISGIRDSE 166

  Fly   256 DGRYQ-----CVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVL 315
            :.|.:     ...|.::.:.|:             |...:..||...|:..              
Mouse   167 EERIKEAAAYIAQKTLLASEEA-------------IAASKQSTASKQSATS-------------- 204

  Fly   316 WRRTASGGNMPLRRVHVLEDRSL------KLDDVTLEDMGEYTCEADNAVGGITATGILTVHAPP 374
             :||.|    .|:|....|.:|.      |.::::|:...|   |.....|.:....:|  || |
Mouse   205 -KRTTS----TLQREETFEKKSRNIAIREKAEELSLKKTLE---ETQTYHGKLNEDHLL--HA-P 258

  Fly   375 KFVIRPKNQLVEIGDEVLFECQANGHPRPTLYW-------SVEGNSSLLLPGYRDGRMEVTLTPE 432
            :|:|:|::..|...:.|...|...|.|.|.|.|       :|..|     ||     ..:..:..
Mouse   259 EFIIKPRSHTVWEKENVKLHCSVAGWPEPRLTWYKNQVPINVHAN-----PG-----KYIIESRY 313

  Fly   433 GRSVLSIARFAREDSGKVVTCNALNAVGSVSS-RTVVSVDTQFELPPPIIEQGPVNQTLPVKSIV 496
            |...|.|::...||:.: ...:|:|..|.:|: .:||....:.||...::..|   .::|: |..
Mouse   314 GMHTLEISKCDFEDTAQ-YRASAMNVQGELSAYASVVVKRYKGELDESLLRGG---VSMPL-SFA 373

  Fly   497 VLP-----------------------------CRTLGTP-----VPQVSWYLDGIPID----VQE 523
            |.|                             ||.:.||     .|:|.||.:|.|:.    ||.
Mouse   374 VTPYGYASKFEIHFDDKFDVSFGREGETMSLGCRVVITPEIKHFQPEVQWYRNGAPVSPSKWVQP 438

  Fly   524 HERRNLSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFR--APELST 586
            |..   .|...||.|.|.: |||||||...........:|.|:           |.|  ..|:..
Mouse   439 HWS---GDRATLTFSHLNK-EDEGLYTIRVRMGEYYEQYSAYV-----------FVRDADAEIEG 488

  Fly   587 YPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMFGKNE--TDGWVAVG-TRVQNTTFT 648
            .|..|.....::..::.:.:||.:....|||.::||.|:   |.|  ||.|.... |.|:...|.
Mouse   489 APAAPLDVVSLDANKDYIIISWKQPAVDGGSPILGYFID---KCEVGTDTWSQCNDTPVKFARFP 550

  Fly   649 QTGLLPGVNYFFLIRAENSHGLSLPSPMSEPITV------------------------------- 682
            .|||:.|.:|.|.:||.|..|:.|||.:|||:..                               
Mouse   551 VTGLIEGRSYIFRVRAVNKTGIGLPSRVSEPVAALDPAEKARLKSHPSAPWTGQIIVTEEEPTEG 615

  Fly   683 --------------------------------GTRYF--------------NSGLDLSEARASLL 701
                                            |..||              |:.|.:...|.:|.
Mouse   616 VIPGPPTDLSVTEATRSYVVLSWKPPGQRGHEGIMYFVEKCDVGAENWQRVNTELPVKSPRFALF 680

  Fly   702 S-------------------------------GDVVELSNA--SVVDS----TSMKLTW-QIING 728
            .                               ||.:::..|  .::.|    ||:.::| :..:.
Mouse   681 DLVEGKSYRFRVRCSNSAGVGEPSETTEVTVVGDKLDIPKAPGKIIPSRNTDTSVVVSWEESRDA 745

  Fly   729 KYVEGFYVYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPNIAAAG----KR 789
            |.:.|:|:.|     .:|.:......|.||:.||..|....:.:.|.:...:. :.|||    .:
Mouse   746 KELVGYYIEA-----SVVGSGKWEPCNNNPVKGSRFTCHGLTTAQSYIFRVRA-VNAAGLSEYSQ 804

  Fly   790 DGE---------------------------TNQSGG--GAPTPLNTKYRML-----------TIL 814
            |.|                           |:..||  ||..|.:.|..:|           :..
Mouse   805 DSEAIEVKAAIGGGVSPDVWPQLSDTPGGLTDSRGGMNGASPPTSQKDALLGSNPNKPSPPSSPS 869

  Fly   815 NGGGASSCTITGLVQYTLYEFFIVPFYKSVEGKPSNSRIARTLED---VPSEAPYGMEALLLNSS 876
            :.|.....|::..||..|..   .|...:.|.:.|.|...:..:|   ||| |||.:..|.....
Mouse   870 SRGQKEVSTVSESVQEPLSS---PPQEAAPEEEQSQSEPPKKKKDPVAVPS-APYDITCLESFRD 930

  Fly   877 AVFLKWKAPEL---KDRHGVLLNYHVIVRGIDTAHNFSRILTNVTIDAASPTLVLANLTEGVMYT 938
            ::.|.||.|:.   .:..|..:||..:|..:......:.|  ....|||   ..::||.|..:|.
Mouse   931 SMVLGWKQPDTTGGAEITGYYVNYREVVGEVPGKWREANI--KAVSDAA---YKISNLKENTLYQ 990

  Fly   939 VGVAAGNNAGVGPYCVPATL 958
            ..|:|.|.||:|   .|:|:
Mouse   991 FQVSAMNIAGLG---APSTV 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 7/34 (21%)
I-set 91..184 CDD:254352 7/33 (21%)
I-set 190..279 CDD:254352 22/117 (19%)
Ig2_Robo 193..279 CDD:143201 22/114 (19%)
I-set 283..370 CDD:254352 17/92 (18%)
Ig 300..370 CDD:299845 13/75 (17%)
Ig 388..>457 CDD:299845 17/75 (23%)
I-set 479..561 CDD:254352 30/119 (25%)
Ig 496..561 CDD:143165 27/102 (26%)
FN3 588..681 CDD:238020 34/95 (36%)
FN3 <817..856 CDD:238020 9/38 (24%)
fn3 864..952 CDD:278470 26/90 (29%)
Myom1NP_034997.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..217 8/43 (19%)
IG_like 264..350 CDD:214653 23/96 (24%)
Ig 397..464 CDD:386229 25/70 (36%)
FN3 490..580 CDD:238020 31/92 (34%)
FN3 618..711 CDD:238020 7/92 (8%)
FN3 719..809 CDD:238020 22/95 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 818..915 18/99 (18%)
FN3 916..1010 CDD:238020 30/101 (30%)
FN3 1021..1110 CDD:238020
Ig 1137..1203 CDD:386229
Ig 1356..1425 CDD:386229
Ig 1554..1645 CDD:386229
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8219
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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