DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and LOC1279664

DIOPT Version :10

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_061510515.1 Gene:LOC1279664 / 1279664 VectorBaseID:AGAMI1_013317 Length:1322 Species:Anopheles gambiae


Alignment Length:1448 Identity:733/1448 - (50%)
Similarity:928/1448 - (64%) Gaps:217/1448 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 LAGLNGLTQVGALKGENPRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSH 138
            |..||.::.. .|..|.|:|.|||:|..||:::|.|.||:|||.|||||.|||||..:|.:.|||
Mosquito    17 LLSLNAISST-VLALEYPKITEHPLDVIVPRHEPATLNCKAEGIPTPTITWFKDGEPIKAEPGSH 80

  Fly   139 RIMLPAGGLFFLKVIHSRRESDAGTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQG 203
            :|:|||||||||||:|||||:|||.|||||.||.|||||.||||||:.||:||||||.|||||||
Mosquito    81 KILLPAGGLFFLKVVHSRRETDAGVYWCEAMNELGVARSHNATLQVSVLREEFRLEPQNTRVAQG 145

  Fly   204 EVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVG 268
            |..|:|||.|||||||.:.||||||||:|..:||||||||||||||:||||||||||||.||:||
Mosquito   146 ETVLLECGPPRGSPEPTVFWRKNGQTLDLTNSKRIRIVDGGNLAIQDARQSDDGRYQCVAKNIVG 210

  Fly   269 TRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLWRRTASGGNMPLRRVHVL 333
            .|||..|||:|||:||||||||:||.|.|||||||||:||:|||||||||:||||||||.||.||
Mosquito   211 VRESTVAFLRVHVKPFLIRGPQDQTVVAGSSVVFQCRVGGEPLPDVLWRRSASGGNMPLERVRVL 275

  Fly   334 EDRSLKLDDVTLEDMGEYTCEADNAVGGITATGILTVHAPPKFVIRPKNQLVEIGDEVLFECQAN 398
            |||||::||:.:||||||:||||||||.|||:|.|.||:||.|::||||.|:|.|.|.||||||.
Mosquito   276 EDRSLRIDDIAIEDMGEYSCEADNAVGSITASGTLVVHSPPSFLVRPKNVLIEPGSEALFECQAT 340

  Fly   399 GHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVS 463
            |||.|||:||||||.:|||||.|...:|||...:|.||||||:..|.|:|||:.|:|:|:|||||
Mosquito   341 GHPHPTLFWSVEGNRTLLLPGSRMDNLEVTQNADGTSVLSIAQVGRMDNGKVIVCSAVNSVGSVS 405

  Fly   464 SRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRN 528
            :|.|:||:.|.:.|||:|.|||.|||||:||:.:|||:..|.|.|.:|||.||||  |...|:.|
Mosquito   406 TRVVLSVNLQDDRPPPLILQGPCNQTLPIKSVAILPCKASGIPPPVISWYKDGIP--VLSSEKIN 468

  Fly   529 LSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTYPGPPGK 593
            ::::|.|||:||.:.:|.||||||||::.||::||..||:|.||||||||:||||:|||||||||
Mosquito   469 ITESGTLTIADLSKIDDSGLYTCVASSKAGKTTWSAMLRIDVPTNPNIKFYRAPEISTYPGPPGK 533

  Fly   594 PQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMFGKNETDGWVAVGTRVQNTTFTQTGLLPGVNY 658
            .|:.:..|:|||::|.||::||.|||:||.:|:||:|:|:||:.|..|:|:.|:|||||..||.|
Mosquito   534 AQVTDITESSVTIAWVRSSQVGASSLIGYTVELFGRNQTEGWLQVANRIQDNTYTQTGLSAGVTY 598

  Fly   659 FFLIRAENSHGLSLPSPMSEPITVGTR-YFNSGLDLSEARASLLSGDVVELSNASVVDSTSMKLT 722
            :|::|||||||||||||:||||.:|:. .|.:|:|:|||||||||||||||.||:.:|||||||.
Mosquito   599 YFVVRAENSHGLSLPSPLSEPILLGSSDNFGTGIDMSEARASLLSGDVVELVNATAIDSTSMKLV 663

  Fly   723 WQIINGKYVEGFYVYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPNIAAAG 787
            |:|||||||||||:|:|.|             |||..:|..|                       
Mosquito   664 WEIINGKYVEGFYIYSRNL-------------NTNRSVGIQS----------------------- 692

  Fly   788 KRDGETNQSGGGAPTPLNTKYRMLTILNGGGASSCTITGLVQYTLYEFFIVPFYKSVEGKPSNSR 852
                                |:|:|:|| .|||||:::||.||:.||||||||||||||||||.|
Mosquito   693 --------------------YKMMTVLN-AGASSCSVSGLEQYSEYEFFIVPFYKSVEGKPSNYR 736

  Fly   853 IARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPELKDRHGVLLNYHVIVRGIDTAHNFSRILTNV 917
            ||||||||||..|:||||||||||||:||||.|....::|:|..|::||||:|...|:|::|:||
Mosquito   737 IARTLEDVPSAPPFGMEALLLNSSAVYLKWKPPTASAQNGILRTYNIIVRGVDLRTNYSKVLSNV 801

  Fly   918 TIDAASPTLVLANLTEGVMYTVGVAAGNNAGVGPYCVPATLRLDPITKRLDPFINQRYPINQDHV 982
            ||:|.|.||:||||||||.|||.|||..:||:||:..|||||||||||:||. .:.|||||.:::
Mosquito   802 TIEATSSTLLLANLTEGVTYTVSVAAATSAGMGPFSNPATLRLDPITKQLDQ-TSHRYPINHNNM 865

  Fly   983 NDVLTQPWFIILLGAILAVLMLSFGAMVFVKRKHMMMKQSALNTMRGNHTSDVLKMPSLSARNGN 1047
            :|:|||||||.:||.||.::||||||||||||||||||||||.::|.:....|:|:|    || :
Mosquito   866 DDILTQPWFIAVLGCILVLMMLSFGAMVFVKRKHMMMKQSALTSLRAHAAGGVVKIP----RN-D 925

  Fly  1048 GYWLDSSTGGMVWRPSPGGDSLEMQKDHIADYAPVCGAPGSPAGGGTSSGGSGGAGSGASGGDDI 1112
            ..|:|.|  ||||    |..|....||||.|||||          ||||                
Mosquito   926 SLWMDPS--GMVW----GHQSTGRGKDHIQDYAPV----------GTSS---------------- 958

  Fly  1113 HGGHGSERNQQ---------RYVGEYSNIPTDYAEVSSF-----------------GKAPSEYGR 1151
              ....|:.||         ||| ||::.|:||||||||                 .:|||||..
Mosquito   959 --TLPLEQQQQHTMLHHNRTRYV-EYTDYPSDYAEVSSFNPPTSDGMNHLSAQLNGSRAPSEYSS 1020

  Fly  1152 HGNASPAPYATSSILSPHQQQQQQQPRYQQRPVPGYGLQRPMHPHYQQQQHQQQQAQQTHQQHQA 1216
            .|..|||||||::::.          ..:....||.......|.|              |....|
Mosquito  1021 GGTRSPAPYATTTLIG----------NVRFITAPGSVTGNDSHLH--------------HLLPSA 1061

  Fly  1217 LQQHQQLPPSNIYQ--QMSTTSEIYPTNTGPSRSVYSEQYYYPKDKQRHIHITENKLSNCHTY-- 1277
            ....|.....:.|.  .|:.||..: .:||..|:..||.|:.|.:|   |:||||||:: ||.  
Mosquito  1062 AAASQMYYNGDSYSGGSMTRTSSDH-ESTGYVRNACSESYFNPNEK---INITENKLAS-HTMSM 1121

  Fly  1278 -----EAAPGAKQSSPISSQFASVRRQQLPPNCSIGRESARFKVLNTDQG-KNQQNLLD------ 1330
                 .|:.|......:.||..|          |.|:.||.....:...| .|..|..|      
Mosquito  1122 LAASGNASAGGGYHHLVPSQNGS----------SNGQSSAASSACSASSGSSNSSNGNDGVRTND 1176

  Fly  1331 --------LDGSSMCYNGLADSGCGGSPSPMAMLM-----------SHEDEHALYH------TAD 1370
                    ..|:.:..||.:.:....|.:|:...:           .|.::.||:.      ::.
Mosquito  1177 STPPMSNKTQGTRVPRNGSSSNRFKLSRTPIVSSLRSALKQESTSGEHANQPALHQEQRKKMSSL 1241

  Fly  1371 GDLDDMERLYVKVDEQQPPQQQQQLIPLVPQHPAEGHLQSWRNQSTRSSRKNGQECIKEPSELIY 1435
            .:|...::||:||.|...|.......|......|..:|....:.:..|...||     :|:.:||
Mosquito  1242 NNLGQKQQLYIKVGETGVPGCTNSWNPSTASAMAMANLYQNTSVTMPSGASNG-----DPNVVIY 1301

  Fly  1436 APGSVASERSLLS-NSGS 1452
            .|   ...||::| .:||
Mosquito  1302 LP---TGNRSVISYRAGS 1316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 IgC_1_Robo 91..185 CDD:409490 66/93 (71%)
Ig strand A 91..95 CDD:409490 2/3 (67%)
Ig strand A' 98..103 CDD:409490 1/4 (25%)
Ig strand B 107..115 CDD:409490 4/7 (57%)
Ig strand C 121..126 CDD:409490 3/4 (75%)
Ig strand C' 129..131 CDD:409490 0/1 (0%)
Ig strand D 139..142 CDD:409490 1/2 (50%)
Ig strand E 145..151 CDD:409490 5/5 (100%)
Ig strand F 162..170 CDD:409490 6/7 (86%)
Ig strand G 173..185 CDD:409490 10/11 (91%)
IgI_2_Robo 192..279 CDD:409389 68/86 (79%)
Ig strand A 192..195 CDD:409389 2/2 (100%)
Ig strand A' 197..201 CDD:409389 3/3 (100%)
Ig strand B 205..212 CDD:409389 3/6 (50%)
Ig strand C 220..225 CDD:409389 1/4 (25%)
Ig strand C' 227..230 CDD:409389 2/2 (100%)
Ig strand D 237..241 CDD:409389 3/3 (100%)
Ig strand E 244..250 CDD:409389 5/5 (100%)
Ig strand F 257..265 CDD:409389 6/7 (86%)
Ig strand G 268..279 CDD:409389 7/10 (70%)
Ig 286..370 CDD:472250 66/83 (80%)
Ig strand B 300..304 CDD:409353 3/3 (100%)
Ig strand C 313..317 CDD:409353 3/3 (100%)
Ig strand E 336..340 CDD:409353 3/3 (100%)
Ig strand F 350..355 CDD:409353 3/4 (75%)
Ig strand G 363..366 CDD:409353 2/2 (100%)
Ig_3 373..457 CDD:464046 52/83 (63%)
Ig 480..566 CDD:472250 46/85 (54%)
Ig strand B 496..500 CDD:409353 1/3 (33%)
Ig strand C 509..513 CDD:409353 1/3 (33%)
Ig strand E 533..537 CDD:409353 2/3 (67%)
Ig strand F 548..553 CDD:409353 4/4 (100%)
Ig strand G 561..564 CDD:409353 1/2 (50%)
COG3979 586..>800 CDD:443178 108/214 (50%)
FN3 588..681 CDD:238020 57/92 (62%)
fn3 864..952 CDD:394996 54/87 (62%)
LOC1279664XP_061510515.1 None

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