DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and ceacam1

DIOPT Version :10

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_001107266.1 Gene:ceacam1 / 114465 ZFINID:ZDB-GENE-010724-14 Length:1025 Species:Danio rerio


Alignment Length:797 Identity:180/797 - (22%)
Similarity:260/797 - (32%) Gaps:229/797 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRESDA 161
            |..|.......|:.:|.|:..||.|..|..:|..|..:          |.::   |.....::.:
Zfish   221 PEKTVYISGSNFSLSCSADSKPTATFNWMLNGNLLNVN----------GPVY---VFTKATQNQS 272

  Fly   162 GTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQGEVAL--------MECGAPRGSPE 218
            |.|.|.|:|.        |||:.|.:....|:....:.|.....:.        :.|...  .|.
Zfish   273 GVYTCGAQNA--------ATLRYAAVTKTIRIVDPISEVVVNSTSFPVENVPFNLRCNVV--GPV 327

  Fly   219 PQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRP 283
            ..|.|.|:|..| ...|......|...|:.::...||||.|||...|.|.....|.. |.|:..|
Zfish   328 DSIQWMKDGVYL-YTDNTTTLSSDNSTLSFKQLALSDDGLYQCTASNAVSDMTQAYN-LTVNYGP 390

  Fly   284 F--LIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLW------------------------------ 316
            .  .:.||  ..|.||.||.|.|.....|.....|                              
Zfish   391 INTAVSGP--FVAAVGDSVTFSCSSNSRPQSQYSWYFNGFNVFNGPVYVTAALLQNQSGLYTCMA 453

  Fly   317 ------------------------------------------RRTASGGNM-------------P 326
                                                      ..||| ||:             |
Zfish   454 FNSITGKTNNNSMTLTVLVPVSNVVVNISDGQQPIFSNPFTLTCTAS-GNVDYIQWMLNGAVIYP 517

  Fly   327 LRRVHVLEDRS-LKLDDVTLEDMGEYTCEADNAVGGITATG--ILTVHAPPKFVIRPKNQLVEIG 388
            ...:....|.| |...::.|.|.|.|.|||.|.:..:|:|.  ::..:.|....:...| :...|
Zfish   518 QDGITFSSDNSTLSFSNLNLSDNGNYQCEASNDISNMTSTAYDLMVNYGPWNVTLNGPN-MARAG 581

  Fly   389 DEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTC 453
            ..|.|.|.|:.:|.....|..  |||.:    .:|.:.||           |..:...||: .||
Zfish   582 STVTFSCTADSYPASQFSWFF--NSSWV----GNGPVYVT-----------APLSHNSSGQ-YTC 628

  Fly   454 NALNAV-GSVSSRTVVS---VDTQFELPPPIIEQGPV-NQTLPVKSIVVLPCRTLGTPVPQVSWY 513
            .|.||: ||.||.:.|.   :|....:...:..|.|| ||..      .|.|...|. |..:.|.
Zfish   629 MAFNAITGSNSSSSAVQLNVIDPVSNVAVNVGNQQPVYNQPF------TLTCTASGN-VDYIQWV 686

  Fly   514 LDGIPIDVQEHERRNLS-DAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIK 577
            |:|  .|...|:|...| |...|:.::|.. .|.|.|.|.|||.....:.|.|   |...|    
Zfish   687 LNG--TDFLPHDRITFSGDNSTLSFNNLTL-SDNGHYQCEASNEISNMTSSVY---DLVVN---- 741

  Fly   578 FFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVG-------GSSLVG----YVIEMFGKNE 631
              ..|...|..|    |.|.|.| :|||.:.|..:...       .||.||    ||.....:|.
Zfish   742 --YGPWRVTING----PSMAETG-SSVTFNCTADSLPASQFSWFFNSSWVGNGPVYVTAPLSQNS 799

  Fly   632 TDGWVAVGTRVQNTTFTQTGLLPGVNYFFLIRAENSHGLSLPSPMSEPITVGTRYFNSGLDLSEA 696
            |..:..:.                   |..|...||...::...:.:.||               
Zfish   800 TGQYTCMA-------------------FNAITGINSSSSAVQLTVIDAIT--------------- 830

  Fly   697 RASLLSGDVVELSNASVVDSTSMKLTWQIINGKYVEGFYVYARQ--LPNPIVNNPAPVTSNTNPL 759
                 |.||.......:| |.|::||.. :||.|:..:::....  .|:..:...|..|:.|...
Zfish   831 -----SVDVTPSPLIPLV-SKSLQLTCN-VNGPYINLYWLRNNNNFFPSNRITFSADNTTVTFSS 888

  Fly   760 LGSTSTSASASASASAL 776
            |.:|...:....:|:|:
Zfish   889 LQTTDDGSYQCVAANAI 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 IgC_1_Robo 91..185 CDD:409490 21/87 (24%)
Ig strand A 91..95 CDD:409490
Ig strand A' 98..103 CDD:409490 1/4 (25%)
Ig strand B 107..115 CDD:409490 2/7 (29%)
Ig strand C 121..126 CDD:409490 2/4 (50%)
Ig strand C' 129..131 CDD:409490 0/1 (0%)
Ig strand D 139..142 CDD:409490 0/2 (0%)
Ig strand E 145..151 CDD:409490 1/5 (20%)
Ig strand F 162..170 CDD:409490 4/7 (57%)
Ig strand G 173..185 CDD:409490 3/11 (27%)
IgI_2_Robo 192..279 CDD:409389 23/94 (24%)
Ig strand A 192..195 CDD:409389 1/2 (50%)
Ig strand A' 197..201 CDD:409389 0/3 (0%)
Ig strand B 205..212 CDD:409389 1/14 (7%)
Ig strand C 220..225 CDD:409389 2/4 (50%)
Ig strand C' 227..230 CDD:409389 1/2 (50%)
Ig strand D 237..241 CDD:409389 0/3 (0%)
Ig strand E 244..250 CDD:409389 1/5 (20%)
Ig strand F 257..265 CDD:409389 4/7 (57%)
Ig strand G 268..279 CDD:409389 2/10 (20%)
Ig 286..370 CDD:472250 30/171 (18%)
Ig strand B 300..304 CDD:409353 2/3 (67%)
Ig strand C 313..317 CDD:409353 1/75 (1%)
Ig strand E 336..340 CDD:409353 2/4 (50%)
Ig strand F 350..355 CDD:409353 2/4 (50%)
Ig strand G 363..366 CDD:409353 1/2 (50%)
Ig_3 373..457 CDD:464046 21/83 (25%)
Ig 480..566 CDD:472250 27/87 (31%)
Ig strand B 496..500 CDD:409353 1/3 (33%)
Ig strand C 509..513 CDD:409353 0/3 (0%)
Ig strand E 533..537 CDD:409353 1/3 (33%)
Ig strand F 548..553 CDD:409353 2/4 (50%)
Ig strand G 561..564 CDD:409353 0/2 (0%)
COG3979 586..>800 CDD:443178 43/204 (21%)
FN3 588..681 CDD:238020 21/103 (20%)
fn3 864..952 CDD:394996
ceacam1NP_001107266.1 Ig 30..116 CDD:472250
Ig strand B 35..39 CDD:409353
Ig strand C 47..51 CDD:409353
Ig strand E 82..86 CDD:409353
Ig strand F 96..101 CDD:409353
Ig strand G 108..111 CDD:409353
Ig 134..208 CDD:472250
Ig strand B 138..142 CDD:409353
Ig strand C 151..155 CDD:409353
Ig strand E 173..177 CDD:409353
Ig strand F 187..192 CDD:409353
Ig strand G 202..205 CDD:409353
Ig 221..281 CDD:472250 17/72 (24%)
Ig strand B 232..236 CDD:409353 1/3 (33%)
Ig strand C 245..249 CDD:409353 1/3 (33%)
Ig strand E 260..264 CDD:409353 0/6 (0%)
Ig strand F 274..279 CDD:409353 2/4 (50%)
Ig 307..387 CDD:472250 21/83 (25%)
Ig strand B 317..321 CDD:409353 0/3 (0%)
Ig strand C 330..334 CDD:409353 2/3 (67%)
Ig strand E 352..356 CDD:409353 1/3 (33%)
Ig strand F 366..371 CDD:409353 3/4 (75%)
Ig 403..469 CDD:472250 8/65 (12%)
Ig strand B 407..411 CDD:409353 2/3 (67%)
Ig strand C 420..424 CDD:409353 0/3 (0%)
Ig strand E 437..441 CDD:409353 0/3 (0%)
Ig strand F 448..453 CDD:409353 0/4 (0%)
Ig strand G 463..466 CDD:409353 0/2 (0%)
Ig 492..564 CDD:472250 19/72 (26%)
Ig strand B 493..497 CDD:409353 0/3 (0%)
Ig strand C 506..510 CDD:409353 0/3 (0%)
Ig strand E 528..532 CDD:409353 2/3 (67%)
Ig strand F 542..547 CDD:409353 2/4 (50%)
Ig strand G 557..560 CDD:409353 1/2 (50%)
Ig_3 577..632 CDD:464046 19/72 (26%)
Ig 654..741 CDD:472250 29/99 (29%)
Ig strand B 670..674 CDD:409353 1/9 (11%)
Ig strand C 683..687 CDD:409353 1/3 (33%)
Ig strand E 705..709 CDD:409353 1/3 (33%)
Ig strand F 719..724 CDD:409353 2/4 (50%)
Ig strand G 734..737 CDD:409353 2/5 (40%)
Ig_3 752..809 CDD:464046 16/76 (21%)
Ig 846..918 CDD:472250 14/61 (23%)
Ig strand B 847..851 CDD:409353 1/3 (33%)
Ig strand C 860..864 CDD:409353 0/3 (0%)
Ig strand E 882..886 CDD:409353 1/3 (33%)
Ig strand F 896..901 CDD:409353 0/4 (0%)
Ig strand G 911..914 CDD:409353
Ig_3 925..982 CDD:464046
Blue background indicates that the domain is not in the aligned region.

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