DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and ceacam1

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:NP_001107266.1 Gene:ceacam1 / 114465 ZFINID:ZDB-GENE-010724-14 Length:1025 Species:Danio rerio


Alignment Length:797 Identity:180/797 - (22%)
Similarity:260/797 - (32%) Gaps:229/797 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRESDA 161
            |..|.......|:.:|.|:..||.|..|..:|..|..:          |.::   |.....::.:
Zfish   221 PEKTVYISGSNFSLSCSADSKPTATFNWMLNGNLLNVN----------GPVY---VFTKATQNQS 272

  Fly   162 GTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQGEVAL--------MECGAPRGSPE 218
            |.|.|.|:|.        |||:.|.:....|:....:.|.....:.        :.|...  .|.
Zfish   273 GVYTCGAQNA--------ATLRYAAVTKTIRIVDPISEVVVNSTSFPVENVPFNLRCNVV--GPV 327

  Fly   219 PQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRP 283
            ..|.|.|:|..| ...|......|...|:.::...||||.|||...|.|.....|.. |.|:..|
Zfish   328 DSIQWMKDGVYL-YTDNTTTLSSDNSTLSFKQLALSDDGLYQCTASNAVSDMTQAYN-LTVNYGP 390

  Fly   284 F--LIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLW------------------------------ 316
            .  .:.||  ..|.||.||.|.|.....|.....|                              
Zfish   391 INTAVSGP--FVAAVGDSVTFSCSSNSRPQSQYSWYFNGFNVFNGPVYVTAALLQNQSGLYTCMA 453

  Fly   317 ------------------------------------------RRTASGGNM-------------P 326
                                                      ..||| ||:             |
Zfish   454 FNSITGKTNNNSMTLTVLVPVSNVVVNISDGQQPIFSNPFTLTCTAS-GNVDYIQWMLNGAVIYP 517

  Fly   327 LRRVHVLEDRS-LKLDDVTLEDMGEYTCEADNAVGGITATG--ILTVHAPPKFVIRPKNQLVEIG 388
            ...:....|.| |...::.|.|.|.|.|||.|.:..:|:|.  ::..:.|....:...| :...|
Zfish   518 QDGITFSSDNSTLSFSNLNLSDNGNYQCEASNDISNMTSTAYDLMVNYGPWNVTLNGPN-MARAG 581

  Fly   389 DEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTC 453
            ..|.|.|.|:.:|.....|..  |||.:    .:|.:.||           |..:...||: .||
Zfish   582 STVTFSCTADSYPASQFSWFF--NSSWV----GNGPVYVT-----------APLSHNSSGQ-YTC 628

  Fly   454 NALNAV-GSVSSRTVVS---VDTQFELPPPIIEQGPV-NQTLPVKSIVVLPCRTLGTPVPQVSWY 513
            .|.||: ||.||.:.|.   :|....:...:..|.|| ||..      .|.|...|. |..:.|.
Zfish   629 MAFNAITGSNSSSSAVQLNVIDPVSNVAVNVGNQQPVYNQPF------TLTCTASGN-VDYIQWV 686

  Fly   514 LDGIPIDVQEHERRNLS-DAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIK 577
            |:|  .|...|:|...| |...|:.::|.. .|.|.|.|.|||.....:.|.|   |...|    
Zfish   687 LNG--TDFLPHDRITFSGDNSTLSFNNLTL-SDNGHYQCEASNEISNMTSSVY---DLVVN---- 741

  Fly   578 FFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVG-------GSSLVG----YVIEMFGKNE 631
              ..|...|..|    |.|.|.| :|||.:.|..:...       .||.||    ||.....:|.
Zfish   742 --YGPWRVTING----PSMAETG-SSVTFNCTADSLPASQFSWFFNSSWVGNGPVYVTAPLSQNS 799

  Fly   632 TDGWVAVGTRVQNTTFTQTGLLPGVNYFFLIRAENSHGLSLPSPMSEPITVGTRYFNSGLDLSEA 696
            |..:..:.                   |..|...||...::...:.:.||               
Zfish   800 TGQYTCMA-------------------FNAITGINSSSSAVQLTVIDAIT--------------- 830

  Fly   697 RASLLSGDVVELSNASVVDSTSMKLTWQIINGKYVEGFYVYARQ--LPNPIVNNPAPVTSNTNPL 759
                 |.||.......:| |.|::||.. :||.|:..:::....  .|:..:...|..|:.|...
Zfish   831 -----SVDVTPSPLIPLV-SKSLQLTCN-VNGPYINLYWLRNNNNFFPSNRITFSADNTTVTFSS 888

  Fly   760 LGSTSTSASASASASAL 776
            |.:|...:....:|:|:
Zfish   889 LQTTDDGSYQCVAANAI 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 21/87 (24%)
I-set 91..184 CDD:254352 21/86 (24%)
I-set 190..279 CDD:254352 23/96 (24%)
Ig2_Robo 193..279 CDD:143201 22/93 (24%)
I-set 283..370 CDD:254352 31/176 (18%)
Ig 300..370 CDD:299845 24/157 (15%)
Ig 388..>457 CDD:299845 19/68 (28%)
I-set 479..561 CDD:254352 26/83 (31%)
Ig 496..561 CDD:143165 21/65 (32%)
FN3 588..681 CDD:238020 21/103 (20%)
FN3 <817..856 CDD:238020
fn3 864..952 CDD:278470
ceacam1NP_001107266.1 Ig 32..115 CDD:299845
Ig 133..208 CDD:299845
IG_like 221..291 CDD:214653 22/90 (24%)
Ig_2 221..284 CDD:290606 18/83 (22%)
Ig 298..387 CDD:299845 22/92 (24%)
Ig_2 400..469 CDD:290606 9/68 (13%)
IG 400..456 CDD:214652 9/55 (16%)
Ig 480..564 CDD:299845 19/84 (23%)
IG_like 494..559 CDD:214653 19/65 (29%)
IG_like 578..648 CDD:214653 26/87 (30%)
Ig_2 579..648 CDD:290606 26/86 (30%)
Ig_CEACAM_D4 650..741 CDD:143217 30/103 (29%)
IG_like 653..740 CDD:214653 29/99 (29%)
Ig_2 752..825 CDD:290606 20/92 (22%)
IG_like 755..825 CDD:214653 18/89 (20%)
Ig 827..917 CDD:299845 21/101 (21%)
IG_like 836..917 CDD:214653 16/72 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596146
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.930

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