DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and robo4

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_002937566.3 Gene:robo4 / 100493397 XenbaseID:XB-GENE-955396 Length:1166 Species:Xenopus tropicalis


Alignment Length:1522 Identity:301/1522 - (19%)
Similarity:470/1522 - (30%) Gaps:616/1522 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 PRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHR----IMLPAGGLFFLK 151
            |||||||.|..|.|:.|.|..|:|||||.|||:|:::|..::|.|....    :.||.|.|||..
 Frog    70 PRIIEHPSDLFVKKDKPATLYCRAEGNPQPTIEWYRNGEHVETSTDDKTQRSYVQLPEGPLFFFS 134

  Fly   152 VIHSRRESDAGTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQGEVALMECGAPRGS 216
            :...:.:||.|.|.|.|:|..|.|.||||:|.||.|||:|||.|::..||.|:...:||..|:|.
 Frog   135 LNQRKGKSDEGIYTCVARNHLGTAFSRNASLYVAALRDDFRLNPSDAVVAVGKQLEIECLPPKGH 199

  Fly   217 PEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHV 281
            |||.::|:|:|..:| ..|.|..| ..|.|.|.:|.::|.|.|.|:..|.||.|||..|.:.|..
 Frog   200 PEPNVTWKKDGIPIN-HNNSRYTI-SAGKLFIGKALKTDSGLYSCLASNQVGERESRAAKIVVLE 262

  Fly   282 RPFLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLE 346
            :|.....|.:.||..||:|.|.|...|||.|...|.:  ..|::|..|..:..:.:|::..|||.
 Frog   263 KPMFTYKPSDVTAKFGSTVQFGCGAQGDPKPTFHWSK--ENGDLPQGRYEITNENTLRIRSVTLY 325

  Fly   347 DMGEYTCEADNAVGGITATGILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWSVEG 411
            |.|:|.|.|.|.:..::|..:|||..|                                      
 Frog   326 DSGKYICTAGNQLETVSAKALLTVQDP-------------------------------------- 352

  Fly   412 NSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFEL 476
                                             .|:|::                          
 Frog   353 ---------------------------------LDTGQI-------------------------- 358

  Fly   477 PPPIIEQGPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQ 541
                                                          |.||               
 Frog   359 ----------------------------------------------EKER--------------- 362

  Fly   542 RHEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENSVTL 606
                                               :.:|.                         
 Frog   363 -----------------------------------QIYRE------------------------- 367

  Fly   607 SWTRSNKVGGSSLVGYVIEMFGKNETDGWVAVGTRVQNTTFTQTGLLPGVNYFFLIRAENSHGLS 671
                                                                             
 Frog   368 ----------------------------------------------------------------- 367

  Fly   672 LPSPMSEPITVGTRYFNSGLDLSEARASLLSGDVVELSNASVVDSTSMKLTWQII-NGKYVEGFY 735
                                         |.|..|.|.|.:.:.|.|:.:.||:: ...:.||:.
 Frog   368 -----------------------------LMGVRVHLDNITALPSASVYVHWQVLTESPFTEGYS 403

  Fly   736 VYARQLPNPIVNNPAPVTSNTNPLLGSTSTSASASASASALISTKPNIAAAGKRDGETNQSGGGA 800
            |:.|.|                           :|..:.....||..|                 
 Frog   404 VFYRTL---------------------------SSTESEWTEWTKSRI----------------- 424

  Fly   801 PTPLNTKYRMLTILNGGGASSCTITGLVQYTLYEFFIVPFYKSVEGKPSNSRIARTLEDVPSEAP 865
                 .:|            |..|..|.:...|||.|.||.....|..||.:..|..|:||:.||
 Frog   425 -----NEY------------STVIPSLWRGQKYEFKIRPFAGKNYGPDSNIKHLRIPEEVPNIAP 472

  Fly   866 YGMEALLL--NSSAVFLKWKAPELKDRHGVLLNYHVIVRGIDTAHNFSRILTNVTIDAASPTLVL 928
            ..:....:  .:..:.:.|:.|........:..|.|.     ...|.:....:..:|..:.:|.:
 Frog   473 QNINVTAVEGGNGTIVVSWEPPPKNIHSSNIKGYKVW-----CFENETHPKADWIVDEETKSLEI 532

  Fly   929 ANLTEGVMYTVGVAAGNNAGVGPYCVPATLRLD-PITKRLDPFINQRYPINQDHVNDVLTQPWFI 992
            ..|..|:.|.|.|||.|:||:|...:|..:.:| |..|.:     :...|..:.:..|:..|.||
 Frog   533 PMLASGIKYQVQVAAINDAGIGMPSIPKYIMIDSPEVKEV-----KDENIYFELILQVVRHPAFI 592

  Fly   993 ILLGAILAVLMLSFGAMVFVKRKHMMMKQSALNTMRGN-------------HTSDVLKMPSL--- 1041
            ..:|.:..:|::.  |.|:|.::|.....:..:::.||             |..|:...|.|   
 Frog   593 GTVGTVAWILLMV--AAVYVCQRHSKRYSTKQHSILGNSLYRFASEDTIIKHRMDISDSPWLSHT 655

  Fly  1042 --SARNGNGYWLDSSTGGM----VWRPSPGGDSLEMQKDHI----------ADYAPVCGAPGSPA 1090
              ||.....|   |||..|    :|  |...|:.:..|..:          :...|:  .|.|.:
 Frog   656 WKSASCSRNY---SSTISMNSQLLW--SETKDTADFHKSTMSFERKSEGSRSQIIPL--VPDSNS 713

  Fly  1091 GGGT----------------SSGGSGGAG---------------------SGASGGDDIHGGHGS 1118
            ..||                .|..|.|.|                     :..||.:|::||   
 Frog   714 LYGTMYVDLPGKDMTTFQRLPSDKSQGMGRHFKTPDPLGLLHHRPLPSYLNDFSGSNDMNGG--- 775

  Fly  1119 ERNQQRYVGEYSNIPTDYAEVSSFGKAPSEYGRHGNASPAPYATSSILSPHQQQQQQ---QPRYQ 1180
            .|::..:....:|.| |.:...|:.|...:..:|.|::|        |||:.|..:|   .|..|
 Frog   776 TRSKLPWQPNINNNP-DISFKDSWSKNCKKELQHANSAP--------LSPYCQAPKQGDSVPSIQ 831

  Fly  1181 QRPVPGYG----------LQRPMHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIYQQMSTT 1235
            ...:...|          ...|...||          ..:.|....|.....|||..:       
 Frog   832 HLNIKKVGKGDYAKVMKTFSSPKILHY----------TTSLQVMDLLPYTPSLPPPPV------- 879

  Fly  1236 SEIYPTNTGPSRSVYSEQYYYPKDKQRHIHITENKLSNC--HTYEAAPGAKQSSPISSQFASVRR 1298
                                 |...:..||..::|:|.|  .:|......||...|:|     ::
 Frog   880 ---------------------PPPDENPIHNDKDKISGCSVSSYSVRNQEKQGHKINS-----KK 918

  Fly  1299 QQLPPNCSIGRESARFKVLN-----------------TDQGKNQQNLLDLDGS-------SMCYN 1339
            :..|...:|...|..|.:.:                 :|||:|.::..:.|.|       |..|.
 Frog   919 KSPPDTLNIKPASECFPINDDGDNVLTPEDVAQYLELSDQGQNTRHKSEYDASLPRPFSPSQTYG 983

  Fly  1340 GLADSGCGGSPSPMAMLMSHEDEHALYHTADGDLDDMERLYVKVDEQQPPQQQQQLIPLVPQHPA 1404
            .:.      ||.|....:..||:       |.||:|:                            
 Frog   984 YIC------SPIPSEADVVDEDD-------DLDLEDI---------------------------- 1007

  Fly  1405 EGHLQSWRNQSTRSSRKNGQECIKEPSELIYAPGSVASER------SLLSNS-GSGTSSQPAGHN 1462
             |.|:|:|......:....:........|:...|||:.:.      |::|:| ||..........
 Frog  1008 -GSLKSYRKYCETPTSSISEYESSMAGSLVNGWGSVSEDNYTSARCSMVSSSDGSFLMDANFAKA 1071

  Fly  1463 VXPLLPGSSLGQSQSKSQSQSQSQSDL 1489
            :...:.....|.||:::..:....:||
 Frog  1072 LAVAVDSFCFGGSQTETAGRDTFYADL 1098

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 45/97 (46%)
I-set 91..184 CDD:254352 45/96 (47%)
I-set 190..279 CDD:254352 36/88 (41%)
Ig2_Robo 193..279 CDD:143201 34/85 (40%)
I-set 283..370 CDD:254352 29/86 (34%)
Ig 300..370 CDD:299845 23/69 (33%)
Ig 388..>457 CDD:299845 2/68 (3%)
I-set 479..561 CDD:254352 3/81 (4%)
Ig 496..561 CDD:143165 3/64 (5%)
FN3 588..681 CDD:238020 0/92 (0%)
FN3 <817..856 CDD:238020 12/38 (32%)
fn3 864..952 CDD:278470 20/89 (22%)
robo4XP_002937566.3 Ig 70..168 CDD:416386 45/97 (46%)
Ig strand A 70..74 CDD:409353 3/3 (100%)
Ig strand A' 77..82 CDD:409353 1/4 (25%)
Ig strand B 86..94 CDD:409353 3/7 (43%)
Ig strand C 100..105 CDD:409353 3/4 (75%)
Ig strand C' 108..110 CDD:409353 0/1 (0%)
Ig strand D 121..125 CDD:409353 0/3 (0%)
Ig strand E 128..134 CDD:409353 4/5 (80%)
Ig strand F 145..153 CDD:409353 4/7 (57%)
Ig strand G 156..168 CDD:409353 7/11 (64%)
Ig 175..260 CDD:416386 35/86 (41%)
Ig strand A 175..178 CDD:409353 2/2 (100%)
Ig strand A' 180..184 CDD:409353 0/3 (0%)
Ig strand B 188..195 CDD:409353 2/6 (33%)
Ig strand C 203..208 CDD:409353 1/4 (25%)
Ig strand C' 210..213 CDD:409353 1/2 (50%)
Ig strand D 219..222 CDD:409353 1/2 (50%)
Ig strand E 225..231 CDD:409353 3/5 (60%)
Ig strand F 238..246 CDD:409353 3/7 (43%)
Ig strand G 249..260 CDD:409353 5/10 (50%)
Ig 269..349 CDD:416386 28/81 (35%)
Ig strand A' 272..276 CDD:409353 1/3 (33%)
Ig strand B 279..288 CDD:409353 4/8 (50%)
Ig strand C 294..299 CDD:409353 1/4 (25%)
Ig strand C' 302..305 CDD:409353 1/2 (50%)
Ig strand D 308..313 CDD:409353 1/4 (25%)
Ig strand E 314..321 CDD:409353 1/6 (17%)
Ig strand F 328..336 CDD:409353 4/7 (57%)
Ig strand G 339..349 CDD:409353 2/9 (22%)
FN3 377..462 CDD:238020 27/145 (19%)
fn3 471..557 CDD:394996 20/90 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8278
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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