DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and chl1b

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:1404 Identity:286/1404 - (20%)
Similarity:438/1404 - (31%) Gaps:478/1404 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LLLLLAGLN--GLTQVGALK-----------GENPRIIEHPMDTTV--PKNDPFTFNCQAEGNPT 119
            ||||.|.||  ...|..||:           .:.|.|.|:...:.:  |..:.|...|:|.|||.
Zfish     8 LLLLAACLNMSSRYQTNALEIPLDVLERMNMEQLPTITEYSPASLIAFPFEESFPVKCEATGNPE 72

  Fly   120 PTIQWFKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRESDAGTYWCEAKNEFGVARSRNATLQV 184
            |..:|.|:|::......:..|.|...|.|.:....:..|.. |.|.|.|.|:.|.|.|.    ::
Zfish    73 PEFRWTKNGQDFDPYQDTRLITLDDSGTFIIPNTGNLTEFQ-GIYRCFATNKLGTAMSE----EI 132

  Fly   185 AFLRDEFRLEPAN----TRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNL---VGNKRIRIVD 242
            .|:.......|..    ..|.:|:..::||..|.|.|..||.|    .|::|   ..::|:.:..
Zfish   133 EFIIPNVPKFPKEIIDPIEVMEGQSVILECNPPTGIPPLQIYW----MTISLQHIEQDERVSVGL 193

  Fly   243 GGNLAIQEARQSDDGRYQC-------------------VVKNVVGTRESATAFLKVHVRPFLIRG 288
            .|||......::|..|..|                   |||:....::|::...:.:....|.|.
Zfish   194 NGNLYFSNTVETDSRRDYCCFAAFPRIRTIVQKTAMSMVVKSNKLMKDSSSGSGRGYANSLLERK 258

  Fly   289 P--------QNQTAVV-GSSVVFQCRIGGDPLPDVLWRRTASGGN-MPLRRVHVLEDRSLKLDDV 343
            |        ::.|.:| |..:..:|...|.|.|.|.|.:.  |.| :|.|.|.....:.|.::.|
Zfish   259 PSLLAPTGMESHTRLVKGEDLQLECIAEGFPTPKVEWVKI--GFNKLPERVVVESHGKLLTVEMV 321

  Fly   344 TLEDMGEYTCEADNAVGGITATGILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWS 408
            ..||.|:|.|.|.|..|.:.....:||..||:|.|.|::|||.||.:||.:|...|:|:||:.|.
Zfish   322 NEEDEGKYMCRAKNPHGEVVHHFHVTVEEPPEFEIEPQSQLVTIGADVLIKCVVKGNPQPTVGWR 386

  Fly   409 VEG---------NSSLLLPGYRDGRMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSS 464
            |.|         |..:|    :||.:.:             ..|..::..|..|.|.|..|::.:
Zfish   387 VNGRPLNEVPTSNRKIL----KDGTISI-------------HNANPENSAVYQCEATNKHGTILA 434

  Fly   465 RTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNL 529
            ...:.:   ..:.|.|:.:..:.........||:.|:...:|...::| ......:..|.||..:
Zfish   435 NANIMI---MNIQPLILTENNLQYMAVEGKSVVMHCKVFSSPASSITW-SKADSANAVEGERFTV 495

  Fly   530 SDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGYLRLDTPT-------------NPNIKFFRA 581
            ...|:|.|.::.: ||.|.|:|.|.|..||.:.:..|.:..||             ...|:|...
Zfish   496 HQNGSLEIHNVMK-EDMGEYSCFAQNTEGKVAIAATLEVKDPTRIVDPPRDLRVLAGTTIQFSCQ 559

  Fly   582 PELS------------------------------------------------------------- 585
            ||..                                                             
Zfish   560 PEFDPSFGDDFEVLWEKDGIALNGSEDGRYILEDGVLEIINVSFGDQGFYACVARTPVDQDVAVA 624

  Fly   586 -----TYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEM-FGKNETDGWVAVGTRVQN 644
                 ..|.||....:.|....||.|.||..:. ..||:..:|:|. ..::|...|..:.....|
Zfish   625 QLSVVDVPDPPEDVILSEHNGRSVKLQWTPGDD-HNSSITEFVLEFEESQHEPGSWREMMRVPGN 688

  Fly   645 TTFTQTGLLPGVNYFFLIRAENSHGLSLPSPMSEPITVGTRYFNSGLDLSEARASLLSGDVVELS 709
            .......|...|:|.|.:.|.|..|...||..:|      ||                     .:
Zfish   689 HHSAPLKLYGHVDYRFRVSAINEVGKGRPSQSTE------RY---------------------KT 726

  Fly   710 NASVVDST------------SMKLTWQII-----NGKYVEGFYVYARQLPNPIVNNPAPVTSNTN 757
            .||..|..            .|.:.|:.:     ||..:|....|.|.                 
Zfish   727 PASAPDKNPENIKIEAHLPHEMDINWEPLSPIEHNGPGLEYKVSYRRH----------------- 774

  Fly   758 PLLGSTSTSASASASA-SALISTKPNIAAAGKRDGETNQSGGGAPTPLNTKY------------- 808
               ||........... |.|:...|.......:....|.:|.|....:.|.|             
Zfish   775 ---GSDEDWTERMVKRHSFLVKNTPTFVLYEIKIQAKNHAGWGPDPKIITAYSGEDFPSAAPDDV 836

  Fly   809 ----------------------------------RMLTILN-------------GGGASSCTITG 826
                                              |:.::|:             .|..:...:||
Zfish   837 AVEVLNNTMVKVRWEHVHKDKIHGHLGGYRVSWWRLRSLLDSKKTHGDKHTLTFSGERNHAVVTG 901

  Fly   827 LVQYTLYEFFIVPFYKSVEGKPSNSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPELKDRH 891
            |..::.|...::.|.....|..|:|...:|.|.||.:|. ...|..:....|.|.|..|  .|.:
Zfish   902 LKPFSEYSLIVMAFNSRGNGPGSHSVNFKTPEGVPGQAA-AFSATNIQKHKVTLTWSPP--VDAN 963

  Fly   892 GVLLNYHVIVRGIDTAHNFSRILTNVTIDAASPTLVLANLTEGVMYTVGVAAGNNAGVGP----- 951
            |||:.|.:..:.|:.......::| :.|.|.|....|.||.....|...:......|.||     
Zfish   964 GVLIGYILQYQLINNTEELGPLMT-LNISADSNKQHLENLEALSKYKFYLRCCTRVGCGPAVSEE 1027

  Fly   952 -YCVP-------ATLRLDPITKRLDP--------------------------------------- 969
             ..||       |:..:...:.|..|                                       
Zfish  1028 RTTVPEATSTDVASFNIRKSSSRFPPRKTTVSPVANATLSSIAVLNISTSVSHNYANISWIPGTE 1092

  Fly   970 ---------FINQR---------------------------YPI---------NQDHVNDVL--- 986
                     |:|.|                           |.:         |.....||:   
Zfish  1093 QTESELYVAFMNNREGNWKISDMLNSSKTFHIIEGLEPGTEYTVRLMTKSWVDNSSIFEDVIRTR 1157

  Fly   987 ------------TQPWFIILLGAI----LAVLMLSF-----GAMVFVKRK---HMMMKQSALNTM 1027
                        .|.|||.|:.||    |.||:..|     |....||.|   |..::...:|..
Zfish  1158 AKGLASIHGSISNQGWFIGLMCAIALLTLIVLIACFVNRNKGGKYSVKEKEDLHPDLESQGINDD 1222

  Fly  1028 RGNHTSDVLKMPSLSARNGNGYWLDSSTGGMVWRPSPGGDSLEMQKDHIADYAPVCGAPGSPAGG 1092
            .....||..:.|..|:::       |..|.:     .||||    .|.:.||.            
Zfish  1223 TFCEYSDNDEKPLKSSQH-------SLNGDL-----KGGDS----GDSMVDYC------------ 1259

  Fly  1093 GTSSGGSGGAGSGASGGDDIH-GGHGSERNQQRYVGEYS 1130
                            .:|.| ...||      ::||||
Zfish  1260 ----------------DEDAHFNEDGS------FIGEYS 1276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 27/96 (28%)
I-set 91..184 CDD:254352 27/94 (29%)
I-set 190..279 CDD:254352 24/114 (21%)
Ig2_Robo 193..279 CDD:143201 24/111 (22%)
I-set 283..370 CDD:254352 27/96 (28%)
Ig 300..370 CDD:299845 21/70 (30%)
Ig 388..>457 CDD:299845 19/77 (25%)
I-set 479..561 CDD:254352 21/81 (26%)
Ig 496..561 CDD:143165 20/64 (31%)
FN3 588..681 CDD:238020 26/93 (28%)
FN3 <817..856 CDD:238020 9/38 (24%)
fn3 864..952 CDD:278470 23/93 (25%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142 23/78 (29%)
Ig 138..231 CDD:325142 20/96 (21%)
Ig 279..348 CDD:325142 21/70 (30%)
Ig 366..438 CDD:325142 21/88 (24%)
IG 454..533 CDD:214652 21/80 (26%)
I-set 538..628 CDD:333254 4/89 (4%)
FN3 632..722 CDD:238020 25/90 (28%)
FN3 734..815 CDD:238020 14/100 (14%)
FN3 832..931 CDD:238020 11/98 (11%)
fn3 942..1022 CDD:306538 20/82 (24%)
FN3 1070..1142 CDD:214495 4/71 (6%)
Bravo_FIGEY 1196..1279 CDD:316405 27/131 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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