DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo2 and robo1

DIOPT Version :9

Sequence 1:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster
Sequence 2:XP_012811710.3 Gene:robo1 / 100124716 XenbaseID:XB-GENE-948809 Length:1680 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317
I-set 91..184 CDD:254352
I-set 190..279 CDD:254352
Ig2_Robo 193..279 CDD:143201
I-set 283..370 CDD:254352
Ig 300..370 CDD:299845
Ig 388..>457 CDD:299845
I-set 479..561 CDD:254352
Ig 496..561 CDD:143165
FN3 588..681 CDD:238020
FN3 <817..856 CDD:238020
fn3 864..952 CDD:278470
robo1XP_012811710.3 IgC_1_Robo 86..184 CDD:409490
Ig strand B 103..107 CDD:409490
Ig strand C 116..120 CDD:409490
Ig strand E 143..147 CDD:409490
Ig strand F 162..167 CDD:409490
Ig strand G 176..179 CDD:409490
IgI_2_Robo 191..277 CDD:409389
Ig strand B 205..209 CDD:409389
Ig strand C 219..223 CDD:409389
Ig strand E 242..246 CDD:409389
Ig strand F 256..261 CDD:409389
Ig strand G 270..273 CDD:409389
IgI_3_Robo 284..366 CDD:409390
Ig strand B 298..302 CDD:409390
Ig strand C 311..315 CDD:409390
Ig strand E 332..336 CDD:409390
Ig strand F 346..351 CDD:409390
Ig strand G 359..362 CDD:409390
IgI_4_Robo 374..471 CDD:409391
Ig strand B 390..394 CDD:409391
Ig strand C 403..407 CDD:409391
Ig strand E 433..437 CDD:409391
Ig strand F 447..452 CDD:409391
Ig strand G 460..463 CDD:409391
IgI_5_Robo 478..564 CDD:409544
Ig strand B 494..498 CDD:409544
Ig strand C 507..511 CDD:409544
Ig strand E 530..534 CDD:409544
Ig strand F 544..549 CDD:409544
Ig strand G 557..560 CDD:409544
FN3 583..669 CDD:238020
FN3 706..792 CDD:238020
fn3 800..886 CDD:394996
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 103 1.000 Domainoid score I6691
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 571 1.000 Inparanoid score I1046
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000772
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X493
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.150

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