DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment br and psq

DIOPT Version :9

Sequence 1:NP_001162638.2 Gene:br / 44505 FlyBaseID:FBgn0283451 Length:1011 Species:Drosophila melanogaster
Sequence 2:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster


Alignment Length:1225 Identity:263/1225 - (21%)
Similarity:432/1225 - (35%) Gaps:386/1225 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTPCKHP 69
            |:|.|||||||:::||.|:.||:|.:||||||:||..|:|||:|||||||.||::||...|||||
  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72

  Fly    70 VILL-QDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGL--TQQQAEDTHS------ 125
            .|:| .|:.|.||..:::|:|.||::|.:..||..|:|||.|::.||  |.:.|:|.:.      
  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATI 137

  Fly   126 ------HLAQIQNLANS----GGRTP-----------------LNTHTQSLPHPHHGSLHDDGGS 163
                  ..|.:.|:.|:    |..:|                 ...|.|...|...........:
  Fly   138 TVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQIN 202

  Fly   164 STLFSRQGAGSPPPTAVPSLPSHINNQLLKRMAMMHRSSAAAA--AEETSHAFK------RLRGS 220
            :.|.::.|..|...:        ::.|||...|.....|.|..  |.:|....:      ||:.|
  Fly   203 AALLTQHGVSSGSVS--------LSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTPRKSRLKRS 259

  Fly   221 DN-SLPLSGAVGS--GSNNNSPDLPPLHARSASPQ------QTPADFSTIKHHNNNNTPPLKEEK 276
            .: .|...|..||  ||::.|....|..|....||      |.|....:::...:.|..|:    
  Fly   260 KSPDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPV---- 320

  Fly   277 RNGPTGNG------------NSGNGNGNGNGASNGNGISISDKLGSLTPSPLARAGADDVKSEPM 329
                :|:|            |.|:|:|:| |.::|:|.|                          
  Fly   321 ----SGSGDDSDAEDHEHEHNHGHGHGHG-GHTHGHGHS-------------------------- 354

  Fly   330 DMVCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFIMSPAE 394
                        .|||:|...||..|:...                     :.|:    :.|||.
  Fly   355 ------------HEHSHDHEHEHKPNKICK---------------------TEHS----VASPAS 382

  Fly   395 NKMFHAAAFNFPNIDPSALLG--LNTQLQQSGD---------LAVSPQGGSTG---SLLSGVIVP 445
            |.  .:|:.|...:......|  :.||:..:.|         |.:...||..|   ..|.....|
  Fly   383 NS--SSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEP 445

  Fly   446 GGSGGTP--------------------SNSSSNNNNNNSNNQQQKVEQQSSPHQLLQQQHHSTPH 490
            .....||                    ||::...:.:|...||.....||..|.:  ..||:...
  Fly   446 PAPSATPVTVTEHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQSPMHSI--SHHHTGDE 508

  Fly   491 TNS---PQLKQEQPKSGGGSCKSSDLHIAAGSERSLSRSSQGMPDAGGHSATPSPTAAYHKRERE 552
            :||   ..:|.|..::         .|:|| ...:||::.|.......|..........|:::::
  Fly   509 SNSNLVQHIKSEVIEA---------KHLAA-QHHALSQAQQQHAHHQAHQQHQQHQQQQHQQQQQ 563

  Fly   553 R--------ERERERERERERERSLDHERDLERPGGTGSPPPPPPSHHSHFGQHPLSLLPSHHQL 609
            .        :.:.::::::::::...|::..::.....:..          |.|      ..|..
  Fly   564 HLHAQQLLAQSQLQQQQQQQQQQQQHHQQQQQQAAAAAAAA----------GVH------GQHGG 612

  Fly   610 HATHHELSAA---------------------------AAHHAHAHAHAAHAHALARAGSP---ME 644
            |.||.::..|                           :.|....::..:....:...|||   .|
  Fly   613 HVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKE 677

  Fly   645 HHHLLHHRRASLSPSGAVSSASGAGGRGGGAGGPG-GPGGSLLSSVRAQDVA------------- 695
            .|:....::..|..|.......||||.||.:||.| |.|...|.:::.|:::             
  Fly   678 PHYTNLDQQHGLGGSVCGPGPGGAGGGGGMSGGAGSGSGEKALDALKNQNMSLTKASAIYGIPST 742

  Fly   696 ----QANRLLLPLP-------------------------LNACHRCDVCGKLLSTKLTLKRHKEQ 731
                :|:|:.:..|                         ::|.......|...||...:.|.:..
  Fly   743 TLWQRAHRMGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGI 807

  Fly   732 QHLQPLNNAVCNLC-HKVFRTLNSLNNHK---------------SIYHRRQKNHHSYFHHGAGVS 780
            :...|.|.|..... ..:.|.|.::....               ::|.|.::       .|..:|
  Fly   808 RLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKR-------EGIELS 865

  Fly   781 QAG-SPGSR--LHQSLSSLSAAAAAANNSV---NVGGGS------------VGGAGGNAVAAAAA 827
            ::. :|.|.  ::::|:|:.....:.|.:.   |:...|            |....|.|:...:.
  Fly   866 RSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSG 930

  Fly   828 AAAAAAELL------------------------LSPIVGAAAVAGGTASSTLQLAAAH----QQQ 864
            ....:.|::                        .:|...::|..|......:|....|    |||
  Fly   931 NTTGSIEIIEHSQENSQQFPYSPSPHPPTPQHHSTPQHHSSAQQGPPTPQHMQQHVVHMQQQQQQ 995

  Fly   865 QQQSSP-----------GIVKPCMDFL-XDQQQLLQQLF--HVALNNSAAAAAAAAAAAAAGGSG 915
            |||.||           .:|......:  .|||.|||::  |.....|..:..||....:.||.|
  Fly   996 QQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERSXESLHAATLMGSTGGGG 1060

  Fly   916 GGPGGVGAGPESINGGGQEYGG--------VQGPSGTPTVDLTQLEHAAGGGGFS 962
            |  ||||....|.:.|......        |.|||..|...:|....:|..||.|
  Fly  1061 G--GGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPVTASGSSAVSGGTS 1113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brNP_001162638.2 BTB 22..118 CDD:279045 53/98 (54%)
BTB 33..118 CDD:197585 47/87 (54%)
C2H2 Zn finger 712..729 CDD:275368 4/16 (25%)
C2H2 Zn finger 742..763 CDD:275368 2/36 (6%)
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 46/83 (55%)
HTH_psq 717..>747 CDD:283007 2/29 (7%)
HTH_psq 767..804 CDD:283007 4/36 (11%)
HTH_psq 821..866 CDD:283007 5/51 (10%)
HTH_psq 873..916 CDD:283007 6/42 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.020

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