DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment br and chinmo

DIOPT Version :9

Sequence 1:NP_001162638.2 Gene:br / 44505 FlyBaseID:FBgn0283451 Length:1011 Species:Drosophila melanogaster
Sequence 2:NP_001188680.1 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster


Alignment Length:1007 Identity:219/1007 - (21%)
Similarity:344/1007 - (34%) Gaps:352/1007 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTP 65
            ||..|.|||:||::.|::...|.||...:...||.|:|:|...|||:::|:|||..|.:|.::||
  Fly     1 MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADLFENTP 65

  Fly    66 ----CKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQ----QAED 122
                |   ||:|:.....::.||:||:|.|||:|.|::|.||||:||.|:|.||:.:    .|:.
  Fly    66 TNGQC---VIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLSTETGRLAAQQ 127

  Fly   123 THSHLAQIQNLANSGGRTPLNTHTQSLPHPHHGSLHDDGGSSTLFS-----RQGAGSPPPTAVPS 182
            ...|:..:..|.:..||..:           ..||  .||||::..     ..|.|:....::..
  Fly   128 AQQHMGDLSPLDSPTGRRSV-----------RNSL--SGGSSSIVPGGVGIGLGGGATGANSMSG 179

  Fly   183 LPSHINNQLLKRMAMMHRSSAAAAAEETSHAFKRLRGSDNSLPLSGAVGSGSNNNSPDLPPLHAR 247
            :  .|.|. |....|......||||...:.:...|..|.|.:...|:.|:.          :.:.
  Fly   180 M--GIGNG-LSLAGMAAGGGMAAAANAAASSLSTLAASANIVDRCGSAGAN----------IISG 231

  Fly   248 SASPQQTPADFSTIKHHNNNNTPPLKEEKRNGPTGNGNSGNGNGNGNGASNGNGISISDKLGSLT 312
            ||:                            |..|:.:.|.|||:|.....|||:          
  Fly   232 SAA----------------------------GIGGSHSGGAGNGSGTVGIGGNGV---------- 258

  Fly   313 PSPLARAGADDVKSEPMDMVCSNNNANANDEHSNDSTGEHDANRSSSGDGGKGSLSSGNDEEIGD 377
                                                         .||.|..|.:|.|:    |.
  Fly   259 ---------------------------------------------GSGGGNNGPISLGS----GA 274

  Fly   378 GLASHHAAPQFIMSPAENKMFHAAAFNFPNIDPSALLGLNTQ-LQQSGDLAVSPQGGSTGSLLSG 441
            | |:||                              ||.:|. |:|..|..:.|.|.|:.|    
  Fly   275 G-AAHH------------------------------LGGSTGILKQECDSLMHPGGSSSSS---- 304

  Fly   442 VIVPGGSGGT-------PSNSSSNNNNNNSNNQQQKVEQQSSPHQLLQQQHHS----TPHTNSPQ 495
                 |.|.|       |.|...........:...:.||:.|   :|:....|    :|....|.
  Fly   305 -----GMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGS---VLRDGSKSSECPSPINKPPY 361

  Fly   496 LKQEQPKSGGGSCKSSDLHIAAGSERSLSRSSQGMPDAGGHSATPSPTAAYHKRERERER--ERE 558
            .:.....|.....::..:|    |||:..:||:    ...||  ||.||.........||  :.|
  Fly   362 HRPSSSASSTAPTEADTMH----SERASPQSSR----YENHS--PSTTAGNGNATSSLERIVKSE 416

  Fly   559 RERERERERSLDHERDLERPGGTG-------------SPPPPPPSHHSHFGQHPLSLLPSHHQLH 610
            |......|.:.|....::.....|             ||||||.|:.|  ...|.:||.:     
  Fly   417 RNNGSANEANDDDRELMDESTDNGAEDLRVKLENLKYSPPPPPNSNTS--STTPNTLLEN----- 474

  Fly   611 ATHHELSAAAAHHAHAHAHAAHAHALARAGSPMEHHHLLHHRRASLSPSGAVSSASGAGGRGGGA 675
                                     |...|:      |..:..||::|:..::..:         
  Fly   475 -------------------------LKADGT------LSSNLAASIAPADMLNVWN--------- 499

  Fly   676 GGPGGPGGSLLSSVRAQDVAQANRLLLPLPLNACHRCDVCGKLLSTKLTLKRHKEQQHLQPLNNA 740
                   .:.:::..:.:.|...:|          :|..|.:|...:..|:.|..|:| |.: ..
  Fly   500 -------ATKMNNKNSVNTADGKKL----------KCLYCDRLYGYETNLRAHIRQRH-QGI-RV 545

  Fly   741 VCNLCHKVFRTLNSLNNHKSIYHRRQKNHHSYFHHGAGVSQAGSPGSRLHQSLSSLSAAAAAANN 805
            .|..|.:.|...|::..|.:..|:::                                       
  Fly   546 PCPFCERTFTRNNTVRRHIAREHKQE--------------------------------------- 571

  Fly   806 SVNVGGGSVGGAGGNAVAAAAAAAAAAAELLLSPIVGAAAVAGGTASSTLQLAAAHQQQQQQSSP 870
             :.:..|:.......|.||||:|||.||....|| ..||..|.....:..:.||  :|:::::..
  Fly   572 -IGLAAGATIAPAHLAAAAAASAAATAAASNHSPXEAAATAAASVVMNANKEAA--KQRKRKTLK 633

  Fly   871 GIVKPCMDFLXDQQQLLQQLFHVALNNSAAAAAAAAAAAAAGGSGGGPGGVGAGPESINGGGQEY 935
            ..::.||                    ....|..|.....|||.|...||...  |:::|.|.|.
  Fly   634 MALEKCM--------------------QRRDAMVAETTTGAGGDGAEAGGESG--EAVDGAGSEE 676

  Fly   936 GGVQGPSGTPTV-----------DLTQLEHAA 956
            |.  |..||..:           :|||...||
  Fly   677 GA--GSEGTEPLTYEQQQQRMHQELTQQIRAA 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brNP_001162638.2 BTB 22..118 CDD:279045 44/99 (44%)
BTB 33..118 CDD:197585 41/88 (47%)
C2H2 Zn finger 712..729 CDD:275368 4/16 (25%)
C2H2 Zn finger 742..763 CDD:275368 5/20 (25%)
chinmoNP_001188680.1 BTB 22..116 CDD:279045 42/96 (44%)
BTB 33..116 CDD:197585 39/85 (46%)
C2H2 Zn finger 519..540 CDD:275368 6/20 (30%)
C2H2 Zn finger 547..568 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.020

Return to query results.
Submit another query.