DRSC/TRiP Functional Genomics Resources

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Protein Alignment Uba2 and uba3

DIOPT Version :9

Sequence 1:NP_524756.2 Gene:Uba2 / 44496 FlyBaseID:FBgn0029113 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_998632.1 Gene:uba3 / 406776 ZFINID:ZDB-GENE-040426-2825 Length:462 Species:Danio rerio


Alignment Length:565 Identity:139/565 - (24%)
Similarity:206/565 - (36%) Gaps:219/565 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFTDIEIIDLDTIDLSNLNRQFLFHREHVGKSKAR 76
            :||.|:...|:||:||||:|||:||:|.||||..|.::|:||||:|||||||||..:.||:.||.
Zfish    61 SLQFLLDTCKILVIGAGGLGCELLKDLALSGFRHIHVVDMDTIDVSNLNRQFLFRPKDVGRPKAE 125

  Fly    77 VARESALSFNPDAKITAYHDSVTSTDYGVNFFKKFDLVLSALDNRAARNHVNRMCL--------- 132
            ||.:......|...:..:...:...|  ..|:::|.:|:..||:..||..:|.|.|         
Zfish   126 VAADFVNDRVPGCSVVPHFKKIQDLD--ETFYRQFHIVVCGLDSVIARRWMNGMLLSLLIYEDGV 188

  Fly   133 ---NADVPLIESGTAGYNGQVELIKRGLTQCYECTPK--DKQRSFPGCTIRNTPSEPIHCIVWAK 192
               ::.:|||:.||.|:.|...:|..|:|.|.:||.:  ..|.:||.|||.:.|..|.||:.:.:
Zfish   189 LDPSSIIPLIDGGTEGFKGNARVILPGMTACIDCTLELYPPQINFPMCTIASMPRLPEHCVEYVR 253

  Fly   193 HLFNQLFGESLEDEDISPDAADPDAKEKDGGDGNGEPKGDGKEKGEESKEEKEAKEDTANGNIMR 257
            .|             :.|       |||..|||   ...||.:                      
Zfish   254 ML-------------LWP-------KEKPFGDG---VVLDGDD---------------------- 273

  Fly   258 INTRQWAKDCNYDAGKLFNKFFNEDITYLLRMSNLWKTRKAPVPVQWDTLLPEGSSGDQKDVAKQ 322
                                                     |..:||                  
Zfish   274 -----------------------------------------PKHIQW------------------ 279

  Fly   323 HHKVWSIEECAQVFANSLKELSANFLKLEGDDTLAWDKDDQPAMDFVAACANVRSHIFDIERKSR 387
                        |:..||                                          ||.:.
Zfish   280 ------------VYQKSL------------------------------------------ERAAE 290

  Fly   388 FEI--------KSMAGNIIPAIATTNAITAGISVMRAFKVLEAKWEQCKAVYARLRPNARNHFLV 444
            |.|        :.:...||||:|:|||:.|.......||:       ..:.|..|     |::||
Zfish   291 FNITGVTYRLTQGVVKRIIPAVASTNAVIAAACATEVFKI-------ATSAYVPL-----NNYLV 343

  Fly   445 PDASLPG---------PNPNCHVCASDPAITLKID---TKRMRIKELRDEVLVK-TLNMLNPDVT 496
            .: .:.|         ...||..|:..|.     |   |...:::|:.|.:... :|.|.:|.:|
Zfish   344 FN-DVDGLYTYTFEAERKENCSACSQVPQ-----DMQFTPSAKLQEVLDYLTENASLQMKSPAIT 402

  Fly   497 VQSNGS------ILISSEEGETECNDGKLLSELNIVDGVILKCDD 535
            ...:|.      ..::|.|..|..|..|.|.||.:|||..|...|
Zfish   403 TTLDGKNKTLYLQTVASIEERTRPNLSKTLKELGLVDGQELAVAD 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Uba2NP_524756.2 ThiF 7..>177 CDD:279270 70/178 (39%)
Uba2_SUMO 21..459 CDD:238766 112/468 (24%)
UAE_UbL 467..552 CDD:291402 22/79 (28%)
UBA2_C 573..691 CDD:292812
uba3NP_998632.1 Interaction with ube2m N-terminus. /evidence=ECO:0000250 52..69 3/7 (43%)
ThiF 66..>240 CDD:279270 69/175 (39%)
Uba3_RUB 70..367 CDD:238765 112/469 (24%)
Interaction with ube2m N-terminus. /evidence=ECO:0000250 156..160 1/3 (33%)
Interaction with ube2m N-terminus. /evidence=ECO:0000250 191..216 8/24 (33%)
Interaction with nedd8. /evidence=ECO:0000250 226..228 0/1 (0%)
Interaction with nae1. /evidence=ECO:0000250 241..247 2/5 (40%)
Interaction with nae1. /evidence=ECO:0000250 291..294 1/2 (50%)
Interaction with ube2m N-terminus. /evidence=ECO:0000250 330..337 1/13 (8%)
Interaction with nedd8. /evidence=ECO:0000250 351..356 0/4 (0%)
Interaction with ube2m core domain. /evidence=ECO:0000250 367..462 23/86 (27%)
E2_bind 375..460 CDD:285976 21/73 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0476
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D686413at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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