DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and GLR2.5

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001332219.1 Gene:GLR2.5 / 830991 AraportID:AT5G11210 Length:918 Species:Arabidopsis thaliana


Alignment Length:1073 Identity:220/1073 - (20%)
Similarity:392/1073 - (36%) Gaps:319/1073 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 FLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFEQGTDEVQSAFKYAMLNHNLNVSSRRFELQ 78
            ||::|..|        :|.|.:.:|..|:  |.:.  |::...:......:|.:|:         
plant    19 FLVFLVLS--------LGKSQKEALQVKV--GIVL--GSNVTLADLSLRAINMSLS--------- 62

  Fly    79 AYVDVINTADAFKLSRLICNQ------------------FSRGVYSMLGAVSPDSFDTLHSYSNT 125
               :..||.:.|| :|::.|.                  ..|.|.:::|..:......|.:..|.
plant    63 ---EFYNTHNGFK-TRIVLNVRDSKQTVVGAAASALYLIKKREVVAIIGPGTSMQAPFLINLGNQ 123

  Fly   126 FQMPFVTPWFPEKVLTPSSGFLDFALSMRPDYH-----------QAIIDTIQFYGWRKIIYLY-D 178
            .::|.::       .:.:|..||   |:|..|.           |||...|:.:.||:::.:| |
plant   124 SKVPIIS-------FSATSPLLD---SLRSPYFIRATHDDSSQVQAISAIIESFRWREVVPIYVD 178

  Fly   179 SHDGLLRLQQIYQGLRPG-NESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAK 242
            :..|        :|:.|. .::|| |:..||...| ||...::.:||.:  ..:.::..||    
plant   179 NEFG--------EGILPNLVDAFQ-EINVRIRYRS-AISLHYSDDQIKK--ELYKLMTMPT---- 227

  Fly   243 QILIQHV------------RDLRLGRRTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRR 295
            ::.|.|:            :::.:..:.|.::::..:.|  ..|.:.|...:|:.|...|.|...
plant   228 RVFIVHMLPDLGSRLFSIAKEIDMLSKGYVWIVTNGIAD--LMSIMGESSLVNMHGVLGVKTYFA 290

  Fly   296 LVREFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLVEAFNKILR-------KKPDQFRNNV 353
            ..:|..    .|:.:.....|.|.::..|...|||...|..:..:|..       .|.|..|:::
plant   291 KSKELL----HLEARWQKRFGGEELNNFACWAYDAATALAMSVEEIRHVNMSFNTTKEDTSRDDI 351

  Fly   354 QRRSQTLMVAQA------AASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDCNT 412
            ......|.||.:      |.||.|             ..|..|.|.         :.:..|:..|
plant   352 GTDLDELGVALSGPKLLDALSTVS-------------FKGVAGRFQ---------LKNGKLEATT 394

  Fly   413 AKGWVNAWEHGDK-ISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWNDDA 476
            .| .:|..|.|:: :..:..||      |.:|          :|.|.:::.:|..::...|..|.
plant   395 FK-IINIEESGERTVGFWKSKV------GLVK----------SLRVDKVSHSSRRLRPIIWPGDT 442

  Fly   477 -----GLQ-PLNAKYVRL--------RPHVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNR 527
                 |.: |.|||.:|:        ...||..|:....|.||                      
plant   443 IFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDENTNVPTV---------------------- 485

  Fly   528 FEGYCKDLADLLAKEL--GINYELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTIT 590
             .|:|.|:.:.:..::  .::||..     .:.:......|.:|.||..:...|.|.|:...||.
plant   486 -TGFCIDVFNTVMSQMPYAVSYEYI-----PFDTPDGKPRGSYDEMVYNVFLGEFDGAVGDTTIL 544

  Fly   591 AERERVIDFSKPFMSLGISIMIKKPVK--QTPGVFSFMNPLSQEIWV--SVIFSYIGVSIVLFFV 651
            |.|...:||:.|:...||..::  |||  :..|.:.|:.||::|:|:  :..|.|||:.:.:|  
plant   545 ANRSHYVDFALPYSETGIVFLV--PVKDGKEKGEWVFLKPLTKELWLVTAASFLYIGIMVWIF-- 605

  Fly   652 SRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQ 716
                  |::..::            ..||:                                   
plant   606 ------EYQADEE------------FREQM----------------------------------- 617

  Fly   717 AALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISS 781
                            ::::.|....|.||...|..:   ....|...|:....|.|..|||..|
plant   618 ----------------IIDKISSVFYFSFSTLFFAHR---RPSESFFTRVLVVVWCFVLLILTQS 663

  Fly   782 YTANLAAFLTVERMVTPINSPEDLAMQ-TEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNS--- 842
            |||.|.:.|||:.:...:...:||... ..:.|.|    .::.|.|..|:.......:..||   
plant   664 YTATLTSMLTVQELRPTVRHMDDLRKSGVNIGYQT----GSFTFERLKQMRFDESRLKTYNSPEE 724

  Fly   843 RKHVFV---------PTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFG 898
            .:.:|:         ..:|| :..::....||.       :|| :..||  |.|      ..|||
plant   725 MRELFLHKSSNGGIDAAFDE-VAYIKLFMAKYC-------SEY-SIIEP--TFK------ADGFG 772

  Fly   899 IATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSELSLS--NVAGIFY 961
            .|.||||.|...|:..:|.:.|...:..:.|||:..:..|   .|..||.|.:.|.  :...:|.
plant   773 FAFPLGSPLVSDISRQILNITEGDAMKAIENKWFLGEKHC---LDSTTSDSPIQLDHHSFEALFL 834

  Fly   962 ILIGGLLVSVFVAILEYCFRSRDSRSASSGSGM 994
            |:   .:|||.:.:|....|....|..::...:
plant   835 IV---FVVSVILLLLMLASRGYQERQHNASPNL 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 93/496 (19%)
ANF_receptor 55..461 CDD:279440 88/462 (19%)
PBP2_iGluR_AMPA 497..938 CDD:270433 96/459 (21%)
Lig_chan 632..967 CDD:278489 73/351 (21%)
GLR2.5NP_001332219.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.920

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