DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and GLR3.5

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001324013.1 Gene:GLR3.5 / 817800 AraportID:AT2G32390 Length:953 Species:Arabidopsis thaliana


Alignment Length:1087 Identity:229/1087 - (21%)
Similarity:395/1087 - (36%) Gaps:294/1087 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GLKLSCLWPSFLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFEQGT---DEVQSAFKYAMLN 65
            |..|.|:   ..||:....|.|..|....|:..||...:.:||:|...:   ...:.||..|:.:
plant    13 GFMLLCI---SALWVLPIQGAGRESFSRNSSSSSLPSSVNVGALFTYDSFIGRAAKLAFVAAIED 74

  Fly    66 HNLNVSSRR-------FELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYS 123
            .|.:.|..|       |:.......:.|..|.:|..          ..::.|:.|.|....|..|
plant    75 INADQSILRGTKLNIVFQDTNCSGFVGTMGALQLME----------NKVVAAIGPQSSGIGHIIS 129

  Fly   124 ---NTFQMPFVTPWFPEKVLTPSSGFLDFALSMRPDYHQ--AIIDTIQFYGWRKIIYLY-DSHDG 182
               |...:||::....:..|: |..:..|..:.:.||.|  ||.|.:.::.||:::.:: |...|
plant   130 HVANELHVPFLSFAATDPTLS-SLQYPYFLRTTQNDYFQMNAITDFVSYFRWREVVAIFVDDEYG 193

  Fly   183 LLRLQQIYQGLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHI--VLDCPTEMAKQIL 245
                       |.|.......|.|:.:.:|....|....      :|..|  :|.....|..:|.
plant   194 -----------RNGISVLGDALAKKRAKISYKAAFPPGA------DNSSISDLLASVNLMESRIF 241

  Fly   246 IQHV------------RDLRLGRRTYHYLLSGLVMDDRWESEIIEFGAIN----ITGFRIVDTNR 294
            :.||            :.|.:....|.::.:..::......|.::..|::    :..||......
plant   242 VVHVNPDSGLNIFSVAKSLGMMGSGYVWITTDWLLTALDSMEPLDPRALDLLQGVVAFRHYTPES 306

  Fly   295 RLVREFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQT 359
            ...|:|...||.|..:.|:.:. :..::.|...||:|:::..|.        |.|.:  |..:.|
plant   307 DNKRQFKGRWKNLRFKESLKSD-DGFNSYALYAYDSVWLVARAL--------DVFFS--QGNTVT 360

  Fly   360 LMVAQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDCNTAKGWVNAWEHGD 424
            .....:..:|:..|...|.                                      ::.:..|:
plant   361 FSNDPSLRNTNDSGIKLSK--------------------------------------LHIFNEGE 387

  Fly   425 KISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGL----------Q 479
            :..:.:.::...||||.|:||.:..|:|....::.:. ::..::|..|::..|.          :
plant   388 RFLQVILEMNYTGLTGQIEFNSEKNRINPAYDILNIK-STGPLRVGYWSNHTGFSVAPPETLYSK 451

  Fly   480 PLN--AKYVRLRPHV------------EFEKN----RTYIVTTVLEEPYIMLKQVAFGEKLHGNN 526
            |.|  ||..||...:            .|.:|    :..:...|..:.|....:...|.|     
plant   452 PSNTSAKDQRLNEIIWPGEVIKPPRGWVFPENGKPLKIGVPNRVSYKNYASKDKNPLGVK----- 511

  Fly   527 RFEGYCKDLAD----LLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAM 587
               |:|.|:.:    ||...:...|.|       ||..|.:.  .:|.::.|:.....|:|:..:
plant   512 ---GFCIDIFEAAIQLLPYPVPRTYIL-------YGDGKKNP--SYDNLISEVAANIFDVAVGDV 564

  Fly   588 TITAERERVIDFSKPFMSLGISIMIK-KPVKQTPGVFSFMNPLSQEIW--VSVIFSYIGVSIVLF 649
            ||...|.:.:||::||:..|:.::.. |..|.:|  :||:.|.:.|:|  ...:|.::|..|   
plant   565 TIITNRTKFVDFTQPFIESGLVVVAPVKGAKSSP--WSFLKPFTIEMWAVTGALFLFVGAVI--- 624

  Fly   650 FVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAA 714
                     |.|            .|..:|:..                 |||.....|.     
plant   625 ---------WIL------------EHRFNEEFR-----------------GPPRRQIITV----- 646

  Fly   715 LQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPR----SVSGRIAAASWFFFT 775
                                        ||||.:...     .|.|    |..||.....|.|..
plant   647 ----------------------------FWFSFSTMF-----FSHRENTVSTLGRFVLLVWLFVV 678

  Fly   776 LILISSYTANLAAFLTVERMVTPINSPEDLAMQTE---VQYGTLLHGSTWDFFRRSQIGLHNKMW 837
            ||:.|||||:|.:.|||:::.:.|...:.|....|   ||.||.    .|.|       |.|:  
plant   679 LIINSSYTASLTSILTVQQLTSRIEGMDTLIASNEPIGVQDGTF----AWKF-------LVNE-- 730

  Fly   838 EYMNSRKHVFVPTYDE-----GIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGF 897
              :|......:|..||     .::|.....|..|::.|.|..:.:.:...|....||:.....|:
plant   731 --LNIAPSRIIPLKDEEEYLSALQRGPRGGGVAAIVDELPYIKALLSNSNCKFRTVGQEFTRTGW 793

  Fly   898 GIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSELSLSNVAGIFYI 962
            |.|....|.|...::.|:|.|.|.|:|.|:|.||.....|| |.:..:|.:.::|:.:..|:|  
plant   794 GFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHEC-TMQISDTENYQISVQSFWGLF-- 855

  Fly   963 LIGGLLVSVFVAILEYCF---------RSRDS-----RSASSGSGMG 995
            ||.|  |..|:|:..:|:         |..:|     ||..:||..|
plant   856 LICG--VVWFIALTLFCWKVFWQYQRLRPEESDEVQARSEEAGSSRG 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 83/468 (18%)
ANF_receptor 55..461 CDD:279440 78/436 (18%)
PBP2_iGluR_AMPA 497..938 CDD:270433 106/463 (23%)
Lig_chan 632..967 CDD:278489 82/348 (24%)
GLR3.5NP_001324013.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.870

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