DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and GLR2.9

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001325277.1 Gene:GLR2.9 / 817458 AraportID:AT2G29100 Length:942 Species:Arabidopsis thaliana


Alignment Length:1060 Identity:221/1060 - (20%)
Similarity:375/1060 - (35%) Gaps:335/1060 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 VGVSAQPSLTEKIPLGAIFEQGT-------DEVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTA 87
            :||....:.|.:|.:|.:.:..|       ..::.|......:|...::.....::..::....|
plant    20 MGVGLGQNQTSEIKVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQA 84

  Fly    88 DAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVT-------------PWFPEKV 139
            .|..|..:...|.|    :::|.::....|.:...:|..|:|.:|             |:|....
plant    85 SAAALDLIKTEQVS----AIIGPINSMQADFMIKLANKTQVPTITFSATSPLLTSIKSPYFVRAT 145

  Fly   140 LTPSSGFLDFALSMRPDYHQAIIDTIQFYGWRKIIYLY-DSHDGLLRLQQIYQGLRPG-NESFQV 202
            :..||..            :||....:|:.||:::.:| |:..|        :|..|. .::.|.
plant   146 IDDSSQV------------RAIASIFKFFRWRRVVAIYVDNEFG--------EGFMPFLFDALQD 190

  Fly   203 ELVKR--ISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLGRRTYHYLL-S 264
            ..|||  |...::..|....|.::...:.:..|:...:.:|.:: .|..||:.:....|.:|: :
plant   191 VEVKRSVIPPEAIDDEIQKELRKLMERQARVFVVHMESSLALRV-FQIARDIGMMEEGYVWLMTN 254

  Fly   265 GLV-----MDDRWESEIIEFGAINITGFRIVDTNRRLVREFYDSWKRL----DPQMSVGAGRESI 320
            |:.     :::......||    .:.|.|......:.:.:|...|||.    :|.|     |:.:
plant   255 GMTHMMRHINNGRSLNTIE----GVLGVRSHVPKSKELGDFRLRWKRTFEKENPSM-----RDDL 310

  Fly   321 SAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGN 385
            :..|...||::..|.:|..|                          |:|.|..|           
plant   311 NVFALWAYDSITALAKAVEK--------------------------ANTKSLWY----------- 338

  Fly   386 GGAGGGFAGSDSGGSGGMASRALDCN-TAKGWVNAWEHGDKISRYLRKVEIEGLTGDIKFNDDGR 449
                      |:|.:       |..| |..|.|....:|..:.:...:|...||.|:.|. .||:
plant   339 ----------DNGST-------LSKNRTDLGNVGVSLYGPSLQKAFSEVRFNGLAGEFKL-IDGQ 385

  Fly   450 RVNYTLHVVEMTVNSAMVKVAEWNDDAGLQ---------------PLNAKYV---------RLRP 490
            ..:....::....|...: :..|....||.               |..:|.|         :||.
plant   386 LQSPKFEIINFVGNEERI-IGFWTPRDGLMDATSSNKKTLGPVIWPGKSKIVPKGWEIPGKKLRV 449

  Fly   491 HVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDG 555
            .|..:|.....|...:..  |..|:...|   :....||...|:|..|:..|. :::|    ...
plant   450 GVPMKKGFFDFVKVTINP--ITNKKTPTG---YAIEIFEAALKELPYLVIPEY-VSFE----SPN 504

  Fly   556 NYGS------EKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKK 614
            ||.:      :|:     ||.:||::            ||||.|....||:.||...|:|:|:..
plant   505 NYNNLVYQVYDKT-----WDAVVGDI------------TITANRSLYADFTLPFTESGVSMMVPV 552

  Fly   615 PVKQTPGVFSFMNPLSQEIWVSV--IFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAH 677
            ...:....:.|:.|.|.|:||:.  .|.:||. :|..|..|.:. ::|                 
plant   553 RDNENKDTWVFLEPWSLELWVTTGCFFVFIGF-VVWLFEHRVNT-DFR----------------- 598

  Fly   678 HEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNS 742
                                  |||                                 ::.:..|
plant   599 ----------------------GPP---------------------------------QYQIGTS 608

  Fly   743 FWFSLAAFMQQGCDLSPR----SVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPE 803
            .|||.:..:     .:.|    |...|.....|.|..|:|..||||:|.:||||:.:...:.:..
plant   609 LWFSFSTMV-----FAHRENVVSNLARFVVVVWCFVVLVLTQSYTASLTSFLTVQSLQPTVTNVN 668

  Fly   804 DLAMQTE---VQYGT----LLHGSTWDFFRRSQIGLHNKMWEYMNSRKHVFVPTYDEGIKRVRNS 861
            ||....:   .|.|.    :|.|          :|.|....:..:|.|..     |:.:     |
plant   669 DLIKNRDCVGYQGGAFVKDILLG----------LGFHEDQLKPFDSAKDA-----DDLL-----S 713

  Fly   862 KGK--------------YALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPIN 912
            |||              .|:|.:| .::||.. ||  |.|.|      |||.|.|..|.|....:
plant   714 KGKSKGIAAAFDEVAYLKAILSQS-CSKYVMV-EP--TFKTG------GFGFAFPKNSPLTGEFS 768

  Fly   913 LAVLTLKENGELIKLRNKWWYEKAECSTHKDGET--SHSELSLSNVAGIFYILIGGLLVS----V 971
            .|:|.|.:|....::.::|:.:|.:|   .|..|  |.:.|:||:..|:|  ||.|..:|    |
plant   769 RAILNLTQNNVTQQIEDRWFPKKNDC---PDPMTALSSNRLNLSSFLGLF--LIAGTAISFSLLV 828

  Fly   972 FVAILEYCFR------SRDS 985
            |||:..|..|      |.||
plant   829 FVALFLYEHRHTLGDDSEDS 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 82/469 (17%)
ANF_receptor 55..461 CDD:279440 78/433 (18%)
PBP2_iGluR_AMPA 497..938 CDD:270433 104/473 (22%)
Lig_chan 632..967 CDD:278489 82/363 (23%)
GLR2.9NP_001325277.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.920

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