DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and si:ch211-251b21.1

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001138274.1 Gene:si:ch211-251b21.1 / 571720 ZFINID:ZDB-GENE-060809-5 Length:458 Species:Danio rerio


Alignment Length:538 Identity:165/538 - (30%)
Similarity:264/538 - (49%) Gaps:122/538 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   476 AGLQPLNAKYVRLRPHVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLA 540
            ||.|||.                   |||:.||||.|.|    |.:|      ||:|.|:...::
Zfish    20 AGPQPLK-------------------VTTIKEEPYAMSK----GSEL------EGFCIDMLSAIS 55

  Fly   541 KELGINYELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMS 605
            .:||..|::.|||||.||  |:...|.|:||:||:||.|||||:|.:|:||:||.|:|.|||||.
Zfish    56 NKLGFKYDVHLVKDGRYG--KTDDSGNWNGMIGEVVRGEADIAVAPLTLTAQREAVVDMSKPFMQ 118

  Fly   606 LGISIMIKKPVKQTPGVF-SFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQS 669
            .|:|.:::|.:......| |.:...|.|:|:.|:.:|:..||.:|.|||.||.||    :||::.
Zfish   119 TGLSFIMRKDLGSDDSQFLSLLKLFSTEMWMGVLVAYLLTSICIFLVSRISPCEW----EQPEKD 179

  Fly   670 QSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVV 734
            .                                                                
Zfish   180 N---------------------------------------------------------------- 180

  Fly   735 NEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPI 799
            |.|::.:|||:::.|...||....|:::|||:..:.|:.|:|:|::.|.|||:.:|..:.....|
Zfish   181 NSFTLSHSFWYTVGALTLQGAGPHPKALSGRVITSIWWIFSLVLLACYFANLSLWLHSDNQQLSI 245

  Fly   800 NSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRKHVFVPTYD----EGIKRVRN 860
            .:.||||.|..::|||:...|:::||:.|....:::::|::...:     :|.    ||.:|.: 
Zfish   246 KTFEDLANQNVIEYGTIKDSSSFNFFKNSNNPTYHRIYEHIKEAQ-----SYSLNAAEGFRRAQ- 304

  Fly   861 SKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELI 925
             ||.||.:.||...:...||. |:..:....:..:|:.||.||||.|...:::|:|.|.|:|||.
Zfish   305 -KGNYAFIGESVSLDLAVARY-CNLTRAPEIIGMRGYSIAAPLGSPLIKNLSVAILRLSESGELD 367

  Fly   926 KLRNKWWYEKAECSTHKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSR-----DS 985
            ..|:|||   |.....||  :..:.|..:::.|:|.:|..||.:.:|:|::|...:||     :.
Zfish   368 YFRSKWW---ASSCVAKD--SKGAPLKPASLKGVFLLLAFGLGLGIFLALMELAAKSRKVANSEQ 427

  Fly   986 RSASSGSGMGLGMGLGGG 1003
            :|..|.....|.....||
Zfish   428 KSCCSVMSAELSQRFRGG 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 1/1 (100%)
ANF_receptor 55..461 CDD:279440
PBP2_iGluR_AMPA 497..938 CDD:270433 142/445 (32%)
Lig_chan 632..967 CDD:278489 90/338 (27%)
si:ch211-251b21.1NP_001138274.1 PBP2_iGluR_non_NMDA_like 25..375 CDD:270403 142/459 (31%)
Lig_chan 146..396 CDD:278489 87/330 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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