DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIB and grik2

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:1009 Identity:346/1009 - (34%)
Similarity:518/1009 - (51%) Gaps:209/1009 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WPSFLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFE------QGTDEVQSAFKYAM--LNHN 67
            |...||.|..         ||.|  ..:...:..|.|||      .|.:|:  |||:|:  :|.|
Zfish    16 WLGLLLLLLC---------VGYS--HGMPHVLRFGGIFESIESGPSGAEEL--AFKFALNTINRN 67

  Fly    68 ---LNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMP 129
               |..::..:::|.    ||..|:|:.||..|:|.|.||.::.|.....|.:.:.|..|...:|
Zfish    68 RTLLPNTTLTYDIQR----INIHDSFEASRKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVP 128

  Fly   130 FVTPWFPEKVLTPSSGFLDFALSMRPDY---HQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQ 191
            .:...:..:|   |.....|.:::.||:   .:||:|.:.|:.|:.:..:||...||:|||    
Zfish   129 HIQTKWKHQV---SDNRDSFYVNLYPDFSSLSRAILDLVHFFKWKTVTVVYDDSTGLIRLQ---- 186

  Fly   192 GLRPGNESFQVELVKRIS--NVSMAIEFLHT--------LEQIGRFENKHIVLDCPTEMAKQILI 246
                       ||:|..|  |:.:.|..|..        |:::.|.:..|::.||..|||..||.
Zfish   187 -----------ELIKAPSRYNIRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCGHEMAAGILK 240

  Fly   247 QHVRDLRLGRRT--YHYLLSGLVMDDRW--ESEIIEFGAINITGFRIVDTNRRLVREFYDSW--K 305
            |   .|.:|..|  |||:.:.|   |.:  :.|...:..:|:|||||::|....|....:.|  :
Zfish   241 Q---ALAMGMMTEYYHYIFTTL---DLFALDVEPYRYSGVNMTGFRILNTENSQVSSIIEKWSME 299

  Fly   306 RLD--PQMSVGAGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAAS 368
            ||.  |:...|.....::..||||||||.|:..|                        |.|:...
Zfish   300 RLQAPPKPDSGLLDGFMTTDAALMYDAVHVVAVA------------------------VQQSPQI 340

  Fly   369 TSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDCNTAKGWVNAWEHGDKISRYLRKV 433
            |.|                                   :|.||..|    .|..|::....:::.
Zfish   341 TVS-----------------------------------SLQCNRHK----PWRFGNRFMTLIKEA 366

  Fly   434 EIEGLTGDIKFN-DDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRPHVEFEKN 497
            ..:||||.|.|| .:|.|.::.|.|:.:. ...:.|:..|:..:||.....:..:.....:...|
Zfish   367 HWDGLTGRINFNRTNGLRTDFDLDVISLK-EEGLEKIGTWDPASGLNMTENQKGKTANVTDSLSN 430

  Fly   498 RTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKS 562
            |:.:|:|:|||||:|.|:  ..:.|:||:||||||.||...||..||..||||||:||.||::..
Zfish   431 RSLVVSTILEEPYVMFKK--SDKPLYGNDRFEGYCVDLLRELAAILGFGYELRLVEDGRYGAQDE 493

  Fly   563 SAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMN 627
            |: |.|:|||.||:..:||:|:|.:.||..||:|||||||||:|||||:.:||....||||||:|
Zfish   494 SS-GQWNGMVRELMDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLN 557

  Fly   628 PLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGG 692
            |||.:||:.::.:|:|||.|||.::||||:||.            :||                 
Zfish   558 PLSPDIWMYILLAYLGVSCVLFVIARFSPYEWY------------NPH----------------- 593

  Fly   693 APLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDL 757
               |..|                             .|..|.|.|::.|||||.:.|.||||.:|
Zfish   594 ---PCNP-----------------------------DSDVVENNFTLLNSFWFGVGALMQQGSEL 626

  Fly   758 SPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTW 822
            .|:::|.||....|:|||||:|||||||||||||||||.:||:|.:|||.||:::||.:..|||.
Zfish   627 MPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGVVEDGSTM 691

  Fly   823 DFFRRSQIGLHNKMWEYMNSRKH-VFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTM 886
            .||::::|..::||||:|:||:| |.|.:.:|||:||..|  .||.|:||...|:|..|. |:..
Zfish   692 TFFKKTKISTYDKMWEFMSSRRHSVMVKSIEEGIERVLTS--DYAFLMESTTIEFVTQRN-CNLT 753

  Fly   887 KVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSEL 951
            ::|..:|:|.:|:.||:||..:|.|.:|:|.|:|.|:|..::.|||.... |...::.|.  |.|
Zfish   754 QIGGLIDSKAYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG-CPEEENKEA--SAL 815

  Fly   952 SLSNVAGIFYILIGGLLVSVFVAILEYCFRSRDS 985
            .:.|:.|||.:|..||::|||||:.|:.::|:.:
Zfish   816 GVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKQN 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 120/467 (26%)
ANF_receptor 55..461 CDD:279440 112/432 (26%)
PBP2_iGluR_AMPA 497..938 CDD:270433 199/441 (45%)
Lig_chan 632..967 CDD:278489 130/335 (39%)
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 122/470 (26%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 198/436 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590938
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.750

Return to query results.
Submit another query.