DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and Gria3

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001268858.2 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:960 Identity:410/960 - (42%)
Similarity:549/960 - (57%) Gaps:160/960 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 IPLGAIFEQGTDEVQSAFKYA--MLNHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGV 104
            |.:|.:|.:.|.:..|||::|  :.|.|.|.:.:.|.|..:||.::::::|.::...|:||||||
Mouse    28 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGV 92

  Fly   105 YSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTPSSGFLDFALSMRPDYHQAIIDTIQFYG 169
            |::.|.....|.:||.|:.......||||.|      |:...:.|.:.|||....||:..:.:|.
Mouse    93 YAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPALKGAILSLLGYYK 151

  Fly   170 WRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVL 234
            |.|.:||||:..|...||.|.:.....|  :|| ..:.:.|:....||...:|::.|.:.|..::
Mouse   152 WEKFVYLYDTERGFSILQAIMEAAVQNN--WQV-TARSVGNIKDIQEFRRIIEEMDRRQEKRYLI 213

  Fly   235 DCPTEMAKQILIQHVRDLRLGR--RTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRRLV 297
            ||..|....||.|.|   .||:  |.|||:|:.|...|.....::..|| |||||:||:....:|
Mouse   214 DCEVERINTILEQVV---ILGKHSRGYHYMLANLGFTDIVLERVMHGGA-NITGFQIVNNENPMV 274

  Fly   298 REFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMV 362
            ::|...|.|||.:....|....:...:||.:||:.|:.|||..:.|::.|     |.||      
Mouse   275 QQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVD-----VSRR------ 328

  Fly   363 AQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDC--NTAKGWVNAWEHGDK 425
                                                ||.|      ||  |.|.    .|..|..
Mouse   329 ------------------------------------GSAG------DCLANPAV----PWSQGID 347

  Fly   426 ISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRP 490
            |.|.|:.|:::|:||:|:|:..|||.|||:.|.||.|:.:. |...||:          |.|..|
Mouse   348 IERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSR-KAGYWNE----------YERFVP 401

  Fly   491 HVEFE--------KNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINY 547
            ..:.:        :|||.:|||:||.||:|.|:  ..|:|.||.|:||||.|||..:||.:.|.|
Mouse   402 FSDQQISNDSSSSENRTIVVTTILESPYVMYKK--NHEQLEGNERYEGYCVDLAYEIAKHVRIKY 464

  Fly   548 ELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMI 612
            :|.:|.||.||:...... .|:|||||||...||||:|.:|||..||.|||||||||||||||||
Mouse   465 KLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 528

  Fly   613 KKPVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLV--QQQPQQSQSPDPH 675
            |||.|..||||||::||:.|||:.::|:|||||:|||.||||||:||.|.  .::|:..||    
Mouse   529 KKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQS---- 589

  Fly   676 AHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVW 740
                                  ||.||                                |||.::
Mouse   590 ----------------------PPDPP--------------------------------NEFGIF 600

  Fly   741 NSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDL 805
            ||.||||.||||||||:||||:||||....|:|||||:||||||||||||||||||:||.|.|||
Mouse   601 NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 665

  Fly   806 AMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRK-HVFVPTYDEGIKRVRNSKGKYALLV 869
            |.|||:.||||..|||.:|||||:|.::.|||.||.|.: .||..|..:|:.|||.||||:|.|:
Mouse   666 AKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLL 730

  Fly   870 ESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYE 934
            ||..|||:..|:||||||||.|||:||:|:|||.||||:.|:|||||.|.|.|.|.||:|||||:
Mouse   731 ESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYD 795

  Fly   935 KAECSTHKDG-ETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSR 983
            |.||.....| :...|.||||||||:||||:|||.:::.||::|:|::||
Mouse   796 KGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSR 845

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 136/440 (31%)
ANF_receptor 55..461 CDD:279440 128/411 (31%)
PBP2_iGluR_AMPA 497..938 CDD:270433 245/443 (55%)
Lig_chan 632..967 CDD:278489 181/338 (54%)
Gria3NP_001268858.2 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610 139/454 (31%)
PBP2_iGluR_AMPA 416..799 CDD:270433 245/443 (55%)
Glutamate binding 502..504 0/1 (0%)