DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and CG11155

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster


Alignment Length:1070 Identity:320/1070 - (29%)
Similarity:500/1070 - (46%) Gaps:234/1070 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 SLTEKIPLGAIFEQGTDE--VQSAFKYAMLNHNLNVSSR---RFELQAYVDVINTADAFKLSRLI 96
            :|...|.:||||.:...|  ::||||||:  :.:|....   ..:|...::.:...|:|:.::.:
  Fly    38 ALPPVIRVGAIFTEDERESSIESAFKYAI--YRINKEKTLLPNTQLVYDIEYVPRDDSFRTTKKV 100

  Fly    97 CNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTPSSGFLD-------FALSMR 154
            |:|...||.::.|.........:.|....:.:|.:            .|.:|       |::::.
  Fly   101 CSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHI------------EGRIDLEYNSKEFSINLY 153

  Fly   155 PDY---HQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKRISNVSMAIE 216
            |.:   ..|..|.:.:..|.|:..:|:...||..|      :....|:.....:::.|..|    
  Fly   154 PSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNL------MHSSTETKAEMYIRQASPDS---- 208

  Fly   217 FLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLGRRTYHYLLSGLVMDDRWESEIIEFGA 281
            :...|..|.:.|...|::|......|. ..:.:..|::....|||:.:...: :.::.|...:.:
  Fly   209 YRQVLRAIRQKEIYKIIVDTNPSHIKS-FFRSILQLQMNDHRYHYMFTTFDL-ETYDLEDFRYNS 271

  Fly   282 INITGFRIVDTNRRLVREFYDSWKRLDPQ-MSVGAGRESISAQAALMYDAVFVLVEAFNKILRKK 345
            :|||.||:||.:.:...|..:..::|... :....|...|..::|||:|:|:.            
  Fly   272 VNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYA------------ 324

  Fly   346 PDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDC 410
               |.|.:.                                     |...|:  ......:.|.|
  Fly   325 ---FANGLH-------------------------------------FLNLDN--HQNFYIKNLSC 347

  Fly   411 NTAKGWVNAWEHGDKISRY--LRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWN 473
            .:.:.|      .|.||.|  :.....:||||.::| .:|||..:.|.::::. ...:.||..|:
  Fly   348 TSDQTW------NDGISLYNQINAAITDGLTGTVQF-VEGRRNIFKLDILKLK-QEKIQKVGYWH 404

  Fly   474 DDAGLQPLNAKYVRLRPHVEFEK---NRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDL 535
            .|.|:...:       |...::.   |.|.:|.|..|.||:|:|:   .:.|.||.||||:|.||
  Fly   405 PDDGVNISD-------PTAFYDSNIANITLVVMTREERPYVMVKE---DKNLTGNLRFEGFCIDL 459

  Fly   536 ADLLAKELGINYELRLVKDGNYG---SEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVI 597
            ...:|.::|..|::.||.|..||   .|.:|    |:|:|.||:.:.||:|:|:|||...||.||
  Fly   460 LKAIATQVGFQYKIELVPDNMYGVYIPETNS----WNGIVQELMERRADLAVASMTINYARESVI 520

  Fly   598 DFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLV 662
            ||:||||:|||.|:.|.|..|...:|||||||:.|||:.|:.:||.||..||.::||||:||:  
  Fly   521 DFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWK-- 583

  Fly   663 QQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSG 727
                      :||..:::                                               
  Fly   584 ----------NPHPCYKE----------------------------------------------- 591

  Fly   728 GSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTV 792
              :..|.|:||:.|||||....|::||..|:|::.|.||....||||.||:||||||||||||||
  Fly   592 --TDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTV 654

  Fly   793 ERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRK-HVFVPTYDEGIK 856
            |||::||.|..|||.|||:.||||..|||..|||.|:||::.|||.||.:|| .|||.||::|||
  Fly   655 ERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIK 719

  Fly   857 RVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKEN 921
            ||  .:|.||.|:||...:|...|: |:..::|..||:||:|||||.||..:|.|:||:|.|:|.
  Fly   720 RV--MEGSYAFLMESTMLDYAVQRD-CNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEK 781

  Fly   922 GELIKLRNKWWYEKAE-CS-THKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSRD 984
            |.:..|.:|||....: |: ..|..|:..:.|.:.|:.|:|.:|:.||.::|.|||.|:|:.||.
  Fly   782 GIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRK 846

  Fly   985 SRSASSGSGMGLGMGLGGGMSGGSLGKANGSMMLGPSSAVPGGMPSSHQRSTLTDTMHAKAKLTI 1049
                                   :|...|.|:             .|.....|...||.....:.
  Fly   847 -----------------------NLNTENQSL-------------CSEMAEELRFAMHCHGSKSR 875

  Fly  1050 QASRDYDNGRVGYLNCASLQYYPPAQLSAT 1079
            ...|     :...|||:|:..|.|:.:|.:
  Fly   876 HRPR-----KRSCLNCSSVPTYVPSNVSTS 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 88/452 (19%)
ANF_receptor 55..461 CDD:279440 79/421 (19%)
PBP2_iGluR_AMPA 497..938 CDD:270433 195/445 (44%)
Lig_chan 632..967 CDD:278489 138/337 (41%)
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 89/453 (20%)
ANF_receptor 61..393 CDD:279440 78/418 (19%)
PBP2_iGluR_Kainate 424..793 CDD:270432 194/439 (44%)
Lig_chan 555..829 CDD:278489 138/337 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462570
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.740

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