DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and Ir75d

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:588 Identity:110/588 - (18%)
Similarity:204/588 - (34%) Gaps:196/588 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 NYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRPHVEFEKNRTYIVTTVLEEPYIMLKQV 516
            |::..:::      :.|||.|      :||               .||.:...:....:::....
  Fly   209 NFSCSLID------LYKVAAW------KPL---------------KRTLVGHNIRNSRHVIHALQ 246

  Fly   517 AFGEKLHGNNRFEGY----------------CKDLA----DLLAKELGINYELRL---------- 551
            .||..:......||.                .:||:    |.::|   :|:.|.|          
  Fly   247 HFGSAITYRQDLEGIVFNSAIVIAFPDLFTNIEDLSLRHIDTISK---VNHRLMLELANRLNMSY 308

  Fly   552 --VKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKK 614
              .:..|||..:  .:|.:||::|...|.|.|:|..|:.:..:|..::||......:...||.::
  Fly   309 NTYQTVNYGWRQ--PNGSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQ 371

  Fly   615 -PVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHH 678
             |:.....:|:.  |...::|||::...|..::||.....||||.                    
  Fly   372 PPLSAVANIFAM--PFENDVWVSILMLLIITTVVLVLELFFSPHN-------------------- 414

  Fly   679 EQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSF 743
                                                                    ::.|..::.
  Fly   415 --------------------------------------------------------HDMSYMDTL 423

  Fly   744 WFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFL-----TVERMVTPINSPE 803
            .|...|..|||..:..|:.|.||...:.|...|.|.:|::||:.|.|     .::.:.....||.
  Fly   424 NFVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSDLGQSPL 488

  Fly   804 DLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRKHVFV-PTYDEGIKRVRNSKGKYAL 867
            ::.:| :.||..:....:.|...::   |::|  :..:..::::: |..  |::::|.  |.:|.
  Fly   489 EIGVQ-DTQYNKIYFTESTDPVTKN---LYHK--KIASKGENIYMRPLL--GMEKMRT--GLFAY 543

  Fly   868 LVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTL--KEN---GELIK- 926
            .||               ::.|..:.:..|......|....:|..|.:|.:  ::|   .|||: 
  Fly   544 QVE---------------LQAGYQIVSDTFSEPEKCGLMELEPFQLPMLAIPTRKNFPYKELIRR 593

  Fly   927 -LR------------NKWWYEKAECSTHKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEY 978
             ||            .||..:|.:|.....|..|..........|||..   |..||..:.:.|:
  Fly   594 QLRWQREVSLVNREERKWIPQKPKCEGGVGGFVSIGITECRYALGIFGC---GAAVSFVLFLFEF 655

  Fly   979 CFR 981
            .||
  Fly   656 IFR 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 5/25 (20%)
ANF_receptor 55..461 CDD:279440 1/8 (13%)
PBP2_iGluR_AMPA 497..938 CDD:270433 91/498 (18%)
Lig_chan 632..967 CDD:278489 64/359 (18%)
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 48/263 (18%)
Lig_chan 388..644 CDD:278489 64/359 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462535
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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