DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and Ir64a

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster


Alignment Length:631 Identity:121/631 - (19%)
Similarity:211/631 - (33%) Gaps:144/631 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 VNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKY-----VRLRPHVEFEKNRTYIVTTVLEEPY 510
            :||..||       .:.::..:....|:| |:..:     ||.|..::..:.|..:|.|......
  Fly   269 LNYGGHV-------NLTEIGSFTPTEGIQ-LHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTG 325

  Fly   511 IMLKQVAFGEKLHGN--NRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVG 573
            .::..:......|.:  |||     :...|:|.....|:...|.:..::|..|   :|.:|||:|
  Fly   326 TLMYYLTHTMSGHIDTMNRF-----NFNLLMAVRDMFNWTFVLSRTTSWGYVK---NGRFDGMIG 382

  Fly   574 ELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVI 638
            .|:|.|.||..|.:....||.:.||.:....|.....:.:.|.........|:.|.:.::|:.::
  Fly   383 ALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWILIV 447

  Fly   639 FSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPD---PHAHHEQLANQQPPGIIGGAPLPAPPG 700
            ...:....:|:|::..   ||:||.........|.   |..||.|...||       ..:.||..
  Fly   448 GCGVLTVFILWFLTTI---EWKLVPHDGSALIKPKGGAPPRHHYQQQQQQ-------EQVEAPVR 502

  Fly   701 PPTPGAQTAAGAAALQAALS---AGSPGSGGSSSAVVNEFSVW---------------------- 740
            |.|          |:...:|   ..........|..::..::|                      
  Fly   503 PIT----------AVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAP 557

  Fly   741 -------NSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTP 798
                   .|..|.:....|||...|...||||....:...|:..:...|:|::...|.:|:    
  Fly   558 ERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK---- 618

  Fly   799 INSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNK----MWEYMNSRKHVFVPTYDEG----- 854
               |:.:...:::.:.:|..|.....:.|... ||.|    |..|  ::|...|||..|.     
  Fly   619 ---PKTIKTLSDLVHSSLKVGMEDILYNRDYF-LHTKDPVSMELY--AKKITSVPTTKENEADED 677

  Fly   855 ------------IKRVRNSKGKYALLVESPKNEYVNAREP------------------------- 882
                        .|..|:....:.....:..|...|..:|                         
  Fly   678 EPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAE 742

  Fly   883 -------CDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECST 940
                   ||..:|......|...|... .|.::..|:..:..:.|.|.|....|.|...|..|. 
  Fly   743 TFSEQDICDLTEVSMFPPQKTVSIMQK-NSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCV- 805

  Fly   941 HKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSRDSR 986
             |..|||...:.:..|:....||:....:::.:...|..:....:|
  Fly   806 -KKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWHNR 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 4/26 (15%)
ANF_receptor 55..461 CDD:279440 4/9 (44%)
PBP2_iGluR_AMPA 497..938 CDD:270433 101/530 (19%)
Lig_chan 632..967 CDD:278489 77/422 (18%)
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 27/119 (23%)
Lig_chan 563..828 CDD:278489 54/277 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462534
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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