DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIB and Ir21a

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster


Alignment Length:611 Identity:131/611 - (21%)
Similarity:219/611 - (35%) Gaps:199/611 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 QPLNAKYVRLRPHVEFE---------KNRTYIVTT----VLEEPYIML--KQVAFGEKLH----- 523
            :.|.|..:|.||:|.:.         .|...::|:    .|..|:|.|  .:..||...|     
  Fly   221 ESLMADPMRERPYVLYTHKLYADGLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGHRFQIS 285

  Fly   524 -------------------GNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWD 569
                               |..|::|....|..:::|.|  |:.:.:.:.    ..:|:..|..|
  Fly   286 AANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRL--NFSIDITET----PTRSNTRGVVD 344

  Fly   570 GMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGIS----IMIKKPVKQTPGVFSFMNPLS 630
            .:..:::.:..||.::.:.||  :||::|.:   ||:|.|    ..|....|..|...:.|.|..
  Fly   345 TIQEQIIERTVDIGMSGIYIT--QERLMDSA---MSVGHSPDCAAFITLASKALPKYRAIMGPFQ 404

  Fly   631 QEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPL 695
            ..:||::|..|:|....:.|..|.:                                        
  Fly   405 WPVWVALICVYLGGIFPIVFTDRLT---------------------------------------- 429

  Fly   696 PAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWF------SLAAFMQQG 754
                                             .|..:.|...|.|.||:      :..:|..:.
  Fly   430 ---------------------------------LSHLMGNWGEVENMFWYVFGMFTNAFSFTGKY 461

  Fly   755 CDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHG 819
            ...:.|..|.|:...:::.||:|:.|.||.::.||:|:......::|..||       .|.    
  Fly   462 SWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIAFVTLPAFPDTVDSVLDL-------LGL---- 515

  Fly   820 STWDFFRRSQIG-LHNKMWE--YMNS---------RKHVFVPTYDEGIKRVRNS-KGKYALLVES 871
                |||   :| |:|..||  :.||         :|..||.:.||||..|..| ...||.|...
  Fly   516 ----FFR---VGTLNNGGWETWFQNSTHIPTSRLYKKMEFVGSVDEGIGNVTQSFFWNYAFLGSK 573

  Fly   872 PKNEYV---NAREPCDTMKVGRNLDTKGF-----GIATPLGSALKDPINLAVLTLKENGELIKLR 928
            .:.||:   |..:...:.:...:|..:.|     |...|..|..|..|:..:|..:::|.:.|:.
  Fly   574 AQLEYLVQSNFSDENISRRSALHLSEECFALFQIGFLFPRESVYKIKIDSMILLAQQSGLIAKIN 638

  Fly   929 NK--WWYEKAECSTHKDGETSHS---------ELSLSNVAGIF------YILIGGLLVSVFV-AI 975
            |:  |..:::.........:|:|         :|:.::..|:|      |.|....|||..| .|
  Fly   639 NEVSWVMQRSSSGRLLQASSSNSLREIIQEERQLTTADTEGMFLLMALGYFLGATALVSEIVGGI 703

  Fly   976 LEYC----FRSRDS-----RSASSGS 992
            ...|    .|||.|     .||||||
  Fly   704 TNKCRQIIKRSRKSAASSWSSASSGS 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375
ANF_receptor 55..461 CDD:279440
PBP2_iGluR_AMPA 497..938 CDD:270433 102/503 (20%)
Lig_chan 632..967 CDD:278489 74/378 (20%)
Ir21aNP_001097043.1 Periplasmic_Binding_Protein_Type_2 289..583 CDD:304360 80/395 (20%)
Lig_chan 407..662 CDD:278489 68/345 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.