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Protein Alignment GluRIB and Gria3

DIOPT Version :9

Sequence 1:	NP_001261621.2	Gene:	GluRIB / 44484	FlyBaseID:	FBgn0264000	Length:	1182	Species:	Drosophila melanogaster
Sequence 2:	NP_001106213.1	Gene:	Gria3 / 29628	RGDID:	70958	Length:	888	Species:	Rattus norvegicus

Alignment Length:	960	Identity:	410/960 - (42%)
Similarity:	549/960 - (57%)	Gaps:	160/960 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly    42 IPLGAIFEQGTDEVQSAFKYA--MLNHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGV 104
            |.:|.:|.:.|.:..|||::|  :.|.|.|.:.:.|.|..:||.::::::|.::...|:||||||
  Rat    28 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGV 92

  Fly   105 YSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTPSSGFLDFALSMRPDYHQAIIDTIQFYG 169
            |::.|.....|.:||.|:.......||||.|      |:...:.|.:.|||....||:..:.:|.
  Rat    93 YAIFGFYDQMSMNTLTSFCGALHTSFVTPSF------PTDADVQFVIQMRPALKGAILSLLGYYK 151

  Fly   170 WRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVL 234
            |.|.:||||:..|...||.|.:.....|  :|| ..:.:.|:....||...:|::.|.:.|..::
  Rat   152 WEKFVYLYDTERGFSVLQAIMEAAVQNN--WQV-TARSVGNIKDVQEFRRIIEEMDRRQEKRYLI 213

  Fly   235 DCPTEMAKQILIQHVRDLRLGR--RTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRRLV 297
            ||..|....||.|.|   .||:  |.|||:|:.|...|.....::..|| |||||:||:....:|
  Rat   214 DCEVERINTILEQVV---ILGKHSRGYHYMLANLGFTDILLERVMHGGA-NITGFQIVNNENPMV 274

  Fly   298 REFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMV 362
            ::|...|.|||.:....|....:...:||.:||:.|:.|||..:.|::.|     |.||
  Rat   275 QQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVD-----VSRR------ 328

  Fly   363 AQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDC--NTAKGWVNAWEHGDK 425
                                                ||.|      ||  |.|.    .|..|..
  Rat   329 ------------------------------------GSAG------DCLANPAV----PWSQGID 347

  Fly   426 ISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRP 490
            |.|.|:.|:::|:||:|:|:..|||.|||:.|.||.|:.:. |...||:          |.|..|
  Rat   348 IERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSR-KAGYWNE----------YERFVP 401

  Fly   491 HVEFE--------KNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINY 547
            ..:.:        :|||.:|||:||.||:|.|:  ..|:|.||.|:||||.|||..:||.:.|.|
  Rat   402 FSDQQISNDSSSSENRTIVVTTILESPYVMYKK--NHEQLEGNERYEGYCVDLAYEIAKHVRIKY 464

  Fly   548 ELRLVKDGNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMI 612
            :|.:|.||.||:...... .|:|||||||...||||:|.:|||..||.|||||||||||||||||
  Rat   465 KLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMI 528

  Fly   613 KKPVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLV--QQQPQQSQSPDPH 675
            |||.|..||||||::||:.|||:.::|:|||||:|||.||||||:||.|.  .::|:..||
  Rat   529 KKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQS---- 589

  Fly   676 AHHEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVW 740
                                  ||.||                                |||.::
  Rat   590 ----------------------PPDPP--------------------------------NEFGIF 600

  Fly   741 NSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDL 805
            ||.||||.||||||||:||||:||||....|:|||||:||||||||||||||||||:||.|.|||
  Rat   601 NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 665

  Fly   806 AMQTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRK-HVFVPTYDEGIKRVRNSKGKYALLV 869
            |.|||:.||||..|||.:|||||:|.::.|||.||.|.: .||..|..:|:.|||.||||:|.|:
  Rat   666 AKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLL 730

  Fly   870 ESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYE 934
            ||..|||:..|:||||||||.|||:||:|:|||.||||.:.:|||||.|.|.|.|.||:|||||:
  Rat   731 ESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYD 795

  Fly   935 KAEC-STHKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSR 983
            |.|| |...|.:...|.||||||||:||||:|||.:::.||::|:|::||
  Rat   796 KGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCYKSR 845

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.