DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIB and Grin2d

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:XP_038951440.1 Gene:Grin2d / 24412 RGDID:2740 Length:1334 Species:Rattus norvegicus


Alignment Length:1082 Identity:240/1082 - (22%)
Similarity:386/1082 - (35%) Gaps:334/1082 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LKLSCLWPSFLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFEQGTDEVQSAFKYAMLNHNLN 69
            |.|:|..| |...:......|||:|   .|:|.....:..|..:......:..|...|:.:..|:
  Rat    20 LALACASP-FPEEVPGPGAVGGGTG---GARPLNVALVFSGPAYAAEAARLGPAVAAAVRSPGLD 80

  Fly    70 VSSRRFELQAYVDVINTADAFKLSRLICNQFS----RGVY----SMLGAVSPDSFDTLHSYSNTF 126
            |  |...|     |:|.:|...|...:|:..|    .||.    |...||:|    .|...|...
  Rat    81 V--RPVAL-----VLNGSDPRSLVLQLCDLLSGLRVHGVVFEDDSRAPAVAP----ILDFLSAQT 134

  Fly   127 QMPFV-TPWFPEKVLTP---SSGFLDFALSMRPDYHQAIIDTIQFYGWRKIIYLYDSHDGLLRLQ 187
            .:|.| .......||||   .|.||....|..... |.|.:.::.|.|...:.:...        
  Rat   135 SLPIVAVHGGAALVLTPKEKGSTFLQLGSSTEQQL-QVIFEVLEEYDWTSFVAVTTR-------- 190

  Fly   188 QIYQGLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDL 252
                  .||:.:| :..::.:::.|:          :|                           
  Rat   191 ------APGHRAF-LSYIEVLTDGSL----------VG--------------------------- 211

  Fly   253 RLGRRTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRRLVREFYDSWKRLDP---QMSVG 314
                               ||..    ||:.                       |||   :..:|
  Rat   212 -------------------WEHR----GALT-----------------------LDPGAGEAVLG 230

  Fly   315 AGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSAS 379
            |...|:|||..|::.|                       :..::.:..|...|..:..||.:...
  Rat   231 AQLRSVSAQIRLLFCA-----------------------REEAEPVFRAAEEAGLTGPGYVWFMV 272

  Fly   380 G----GGGGNGGAG------GG-------FAGSDSGGSGGMASRAL------------------- 408
            |    ||||:|..|      ||       ||...:|....:|.|..                   
  Rat   273 GPQLAGGGGSGVPGEPLLLPGGSPLPAGLFAVRSAGWRDDLARRVAAGVAVVARGAQALLRDYGF 337

  Fly   409 ------DCNTAKGWVNAWEHGDKISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVNSAMV 467
                  ||.|.    |....|:.:.||...:..:  ..|..||:||..||.:|.|:.:|.:....
  Rat   338 LPELGHDCRTQ----NRTHRGESLHRYFMNITWD--NRDYSFNEDGFLVNPSLVVISLTRDRTWE 396

  Fly   468 KVAEWNDDAGLQ---PLNAKYVRLRPHVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGN---- 525
            .|..|.... |:   ||.::|.|....|:..::.|  |.|:.|.|:::::.   .:.:.|.    
  Rat   397 VVGSWEQQT-LRLKYPLWSRYGRFLQPVDDTQHLT--VATLEERPFVIVEP---ADPISGTCIRD 455

  Fly   526 --------NR---------------FEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGG 567
                    ||               .:|:|.|:...||..:|.:|:|.||.:|.:|.:   ..|.
  Rat   456 SVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKK---IDGV 517

  Fly   568 WDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFM------ 626
            |:||:||:..:.||:||.::||..||..::|||.||:..|||:|:.:. ..|....:|:      
  Rat   518 WNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARS-NGTVSPSAFLAFAWLT 581

  Fly   627 -----NPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQP 686
                 .|.|..:||.:....:.|..|..|:..:.                 .|..::..||..:.
  Rat   582 PPMSPEPYSPAVWVMMFVMCLTVVAVTVFIFEYL-----------------SPVGYNRSLATGKR 629

  Fly   687 PGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFM 751
            |                                       |||:      |::..|.|...|...
  Rat   630 P---------------------------------------GGST------FTIGKSIWLLWALVF 649

  Fly   752 QQGCDL-SPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQ------T 809
            .....: :||..:.:|....|.||.:|.::|||||||||:..|..|..::...|...|      .
  Rat   650 NNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQRPQEQYP 714

  Fly   810 EVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNSRKHVFVPTYDEGIKRVRNSKGKYALLVESPKN 874
            .:::||:.:|||....|.:...:|:.|..|..       |..:|.:.:::..|....:...:..|
  Rat   715 PLKFGTVPNGSTEKNIRSNYPDMHSYMVRYNQ-------PRVEEALTQLKAGKLDAFIYDAAVLN 772

  Fly   875 EYVNAREPCD--TMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAE 937
            ......|.|.  |:..|:...|.|:|||...||..|.||:||:|....:.|:..|...|.  ...
  Rat   773 YMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWL--SGI 835

  Fly   938 CSTHKDG-ETSHSELSLSNVAGIFYILIGGLLVSVFVAILEY 978
            |  |.|. |...|:|.:.|:||:||:|:..:.:|:.|...|:
  Rat   836 C--HNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEH 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 92/491 (19%)
ANF_receptor 55..461 CDD:279440 88/462 (19%)
PBP2_iGluR_AMPA 497..938 CDD:270433 116/487 (24%)
Lig_chan 632..967 CDD:278489 81/344 (24%)
Grin2dXP_038951440.1 PBP1_iGluR_NMDA_NR2 46..410 CDD:380601 94/503 (19%)
PBP2_iGluR_NMDA_Nr2 427..838 CDD:270436 117/492 (24%)
PHA03307 <1125..>1312 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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