DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and glr-6

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:942 Identity:240/942 - (25%)
Similarity:397/942 - (42%) Gaps:233/942 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 LSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFV----TPWFPEKVLTPSSGFLDFALS 152
            |:..||:..:..|..::|.|..:|...:........:.|:    ||.:.:|..|        :|:
 Worm    73 LNTKICDLANSEVSVIIGVVDRESGSIIEEQCAELNILFIHYYWTPGYQKKQQT--------SLN 129

  Fly   153 MRP--DYHQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKRISNVSMAI 215
            :.|  :|.|.:...|..:.|...:|:|.::|...:|               :|.:.|:.. |.|:
 Worm   130 LYPSMEYSQLMERLINLWRWDNFVYIYSNYDAPKQL---------------IETLSRLEK-SPAL 178

  Fly   216 EFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLGRRTYHYLLSGLVMDDRWESEIIEF- 279
            ...|||:.              :.||..:.::...|     |...:.....|:.:...:|.:.| 
 Worm   179 LRAHTLDD--------------SMMATALALRDTCD-----RNRCWPKKNRVLIELSPNETLTFF 224

  Fly   280 ------GAINITGFRIV----DTNRRLVREFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVL 334
                  |.|::..:.::    |.|..|.:..::..:         ....::|.:.....|....|
 Worm   225 DASLKLGMISVHNWFLITALDDLNDHLSQYTHNGMR---------VSLLTVSKEKWNQNDLAIKL 280

  Fly   335 VEAFNKILRKKPDQ----FRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGNGGAGGGFAGS 395
            .:.:.:.|.|.|..    |::........|:..||.                             
 Worm   281 PDMYQEYLAKIPSNPRTPFKDFAFIFDSILLACQAG----------------------------- 316

  Fly   396 DSGGSGGMASRALDCNTAKGWVNAWEHGDKISRYLRKVEI------EGLTGDIKFNDDGRRVNYT 454
                    ..|.:.|            ||  :..::|.::      :||||.|.||....|.:..
 Worm   317 --------DRRIISC------------GD--NEAVKKFKLPIVKPFKGLTGKISFNGTSDRSDSE 359

  Fly   455 LHVVEMTVNSAMVKVAEWNDD-AGLQPLN--AKYVRLRP--HVEFE----KNRTYIVTTVLEEPY 510
            ||:.||.:..|.:....|... .|.:.|.  ||.:   |  |..::    ::||..||::.|:||
 Worm   360 LHIWEMGITGAGLHTGIWKSTWEGSKELTMLAKNI
---PGTHEHYQASVRESRTLKVTSIHEKPY 421

  Fly   511 IMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVGEL 575
            ::.|.:..|...|     ||:|.||.|.||:.|..||.|::|||..|| |:.:....||||:||:
 Worm   422 VIEKIMPDGRIKH-----EGFCVDLLDKLAEMLHFNYTLKIVKDNKYG-ERKNGTDEWDGMIGEI 480

  Fly   576 VRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKP-VKQTPGVFSFMNPLSQEIWVSVIF 639
            :|.:||:|:|.:|:||.|..||||:.||:.||||:::::| .|.:..:..|:.|||..:|.   |
 Worm   481 LRGDADMAVAPITVTATRLEVIDFTDPFLQLGISMLMRQPNPKSSSSLTRFLWPLSASVWT---F 542

  Fly   640 SYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTP 704
            |.|...|....|:                                                    
 Worm   543 SAIATVITALLVT---------------------------------------------------- 555

  Fly   705 GAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAA 769
                  .||.|          |...|:|   ||.:.||.|:.:...::.|...:.::.:.|:.:|
 Worm   556 ------VAAVL----------SPKESTA---EFKIQNSVWYLVCILLRAGSGYNCQAGATRLISA 601

  Fly   770 SWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHN 834
            .|:.|||:||:.||||.||.|||:|...|.||.|:|..|||..:|::|.|||..||:.|:|....
 Worm   602 VWWSFTLVLIAQYTANFAALLTVDRKSMPFNSFEELGNQTEYNFGSILGGSTMQFFKYSRIETFR 666

  Fly   835 KMWEYMNSRK-HVFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGR-NLDTKGF 897
            ::||.|.|.: ..||.|..||:.||.|.  ||..|:||...:| ...:.|:..:||. .|.:.|:
 Worm   667 RLWERMQSAEPSAFVGTNHEGVNRVLNE--KYVFLMESATLDY-QVTQNCNLTRVGNVVLGSNGY 728

  Fly   898 GIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYE-KAECSTHKDGETSHSELSLSNVAGIFY 961
            .||.|.||..::.:...:|.|.|.|.::.|:|.||.: :.||.: .:.|...:.|...||.|:|.
 Worm   729 SIALPKGSKWREKLTRQILDLNEKGIILMLKNNWWKKSQQECQS-SEPEDLQTALGAENVYGLFL 792

  Fly   962 ILIGGLLVSVFVAILE---YCFRSRDSRSASS 990
            :|..|..:.|..|:||   :.|..::.|:..:
 Worm   793 LLALGSGIGVLCAVLEHTHFIFFEKNKRNGQT 824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 70/413 (17%)
ANF_receptor 55..461 CDD:279440 67/395 (17%)
PBP2_iGluR_AMPA 497..938 CDD:270433 148/444 (33%)
Lig_chan 632..967 CDD:278489 98/337 (29%)
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591 74/423 (17%)
PBP2_iGluR_Kainate 409..764 CDD:270432 147/437 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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