DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and glr-7

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001337310.1 Gene:glr-7 / 180547 WormBaseID:WBGene00001618 Length:885 Species:Caenorhabditis elegans


Alignment Length:607 Identity:160/607 - (26%)
Similarity:270/607 - (44%) Gaps:142/607 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   441 DIKFNDDGRRV-NYTLHVVEMTVNSAMVKV-----------AEWNDDAG----LQPLNAKYVRLR 489
            ||..||..... |||...:.|......|::           |.:|.:.|    :..|:..|..|:
 Worm   301 DIILNDPAHEYGNYTEAGLNMFFQDVEVRIYKIDRDRDHEDALFNKEVGVWSPISKLSVMYGTLQ 365

  Fly   490 PHVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKD 554
              |:......:.|.|:::.|::.    ..|:.   :..:||||.||.:::..|:...|.:..|:|
 Worm   366 --VDVRNLNIFRVVTLIQPPFVQ----RTGDP---DTPYEGYCIDLINMIQVEVNFTYTIYEVED 421

  Fly   555 GNYGSEKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSL-GISIMIKKPVKQ 618
            |::|:  ...:|.|:|::|.||...||||:|.:::.||||..:||:.|:..| |.:|::||...:
 Worm   422 GSFGT--MDDNGNWNGLIGALVSGSADIALAPLSVMAERENDVDFTVPYYDLVGTTILMKKADVE 484

  Fly   619 TPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLAN 683
            . .:|.||..|...:|:.::.:|:..||:|:...||||:           |.:.:...:...:..
 Worm   485 Y-SLFKFMKVLEWPVWLCIVAAYLFTSILLWIFDRFSPY-----------SFTNNKERYQNDIEK 537

  Fly   684 QQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLA 748
            :|                                                   ||:....||.:.
 Worm   538 RQ---------------------------------------------------FSLKECLWFCMT 551

  Fly   749 AFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQY 813
            :...||...:|:::|||:.||:|:.|..|:|:||||||||||||.|:..||:|.:|||.|.:::|
 Worm   552 SLTPQGGGEAPKNISGRLVAATWWLFGFIIIASYTANLAAFLTVSRLEQPISSLDDLAKQYKIEY 616

  Fly   814 GTLLHGSTWDFFRR------------SQIGLH----------------------NKMWEYMNSRK 844
            ..:...::..:|||            .::.|:                      ..||.||...|
 Worm   617 APIKGSASETYFRRMAEIEETFYNMWKEMSLNESMSPRDRAKLAVWDYPVSDKFTNMWRYMQESK 681

  Fly   845 HVFVP-TYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALK 908
               :| ..|..:.||.||...:|.:.::.:.:|. |...|:..:||.....|.:.||...|..||
 Worm   682 ---LPVNMDTAVDRVLNSVDGFAFIGDATEIKYA-ALTNCNLQQVGTEFSRKPYAIAVQSGHILK 742

  Fly   909 DPINLAVLTLKENGELIKLRNKWWYE---KAEC---STHKDGETSHSELSLSNVAGIFYILIGGL 967
            |.|:.|:|.|.....|..|:.|||.:   |..|   |...||      :|:.|:.|:|.:::.|:
 Worm   743 DKISSAILMLLNERRLETLKEKWWTDNPNKVSCPDSSDESDG------ISIQNIGGVFIVILAGI 801

  Fly   968 LVSVFVAILEYCFRSRDSRSAS 989
            .:|:.....||.:..|.:|.|:
 Worm   802 ALSIVTLAFEYYYYKRKARKAA 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 12/52 (23%)
ANF_receptor 55..461 CDD:279440 7/20 (35%)
PBP2_iGluR_AMPA 497..938 CDD:270433 129/479 (27%)
Lig_chan 632..967 CDD:278489 94/375 (25%)
glr-7NP_001337310.1 Periplasmic_Binding_Protein_Type_1 <102..>220 CDD:324556
PBP2_iGluR_putative 373..767 CDD:270435 127/469 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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