DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIB and gria3a

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:963 Identity:388/963 - (40%)
Similarity:526/963 - (54%) Gaps:187/963 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFEQGTDEVQSAFKYA--MLNHNLNVSSRRFEL 77
            :|.|.|         :.:..|.....:|.:|.:|.:.|.:..|||::|  :.|.|.|::.:.|.|
Zfish     9 VLLLPW---------LVLQTQAGFPNQINIGGLFMRSTVQEHSAFRFAVQLYNTNQNITEKPFHL 64

  Fly    78 QAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTP 142
            ...||.:.::::|.::...|:|||||||::.|.....|.:||.|:.......|:||.|      |
Zfish    65 NYNVDNLESSNSFSVTHAFCSQFSRGVYAIFGFYDRRSMNTLTSFCGALHTSFITPSF------P 123

  Fly   143 SSGFLDFALSMRPDYHQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKR 207
            :...:.|.|.|||....|::..:..|.|.|.:||||:..|...||.|.:.....|  :|| ..:.
Zfish   124 TDTDVQFVLQMRPSLRGALLSLLAHYKWEKFVYLYDTDRGFSILQAIMESAVMNN--WQV-TARS 185

  Fly   208 ISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLGR--RTYHYLLSGLVMDD 270
            :.|:...:|:...:|::.|.:.|..::||..|....||.|.|   ..|:  |.|||:|:.|...:
Zfish   186 VGNIVDPLEYRRIIEEMDRRQEKRFLIDCEVERINSILEQVV---IAGKNSRGYHYILANLGFTN 247

  Fly   271 RWESEIIEFGAINITGFRIVDTNRRLVREFYDSWKRLDPQMSVGAGRESISAQAALMYDAVFVLV 335
            ....::...|| |||||:|::.:..:|::|...|:|||.:....:....:...:||.:||:.|:.
Zfish   248 MSLDKVFSGGA-NITGFQIINPDSPIVQQFLQRWERLDEREFPESRSSPLKYTSALTHDAILVIA 311

  Fly   336 EAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGS 400
            |||..:.|::.|     :.||                                          ||
Zfish   312 EAFRYLRRQRVD-----ISRR------------------------------------------GS 329

  Fly   401 GGMASRALDC--NTAKGWVNAWEHGDKISRYLRKVEIEGLTGDIKFNDDGRRVNYTLHVVEMTVN 463
            .|      ||  |.|.    .|..|..|.|.|:.|:::|:||:|:|:..|||.|||:.|.||...
Zfish   330 AG------DCLANPAV----PWSQGIDIERALKMVQVQGMTGNIQFDSFGRRSNYTVDVYEMKPG 384

  Fly   464 SAMVKVAEWNDDAGLQPLNAKYVRLRPHVEFEK-----------------NRTYIVTTVLEEPYI 511
            .|. |:..||                   ||||                 |||.:|||::|.||:
Zfish   385 GAR-KIGYWN-------------------EFEKFVYIVEQQVTNESSSVENRTIVVTTIMEAPYV 429

  Fly   512 MLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVGELV 576
            |.|:...  :|.||:|:||||.|||..:||.:||.|:|.:|.||.||:...... .|:|||||||
Zfish   430 MYKRNYM--QLEGNDRYEGYCVDLASEIAKHVGIKYKLSIVADGKYGARDPETK-TWNGMVGELV 491

  Fly   577 RKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVIFSY 641
            ...||||:|.:|||..||.||||||||||||||||||||.|..||||||::||:.|||:.::|:|
Zfish   492 YGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAY 556

  Fly   642 IGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPTPGA 706
            ||||:|||.||||||:||.|    ....::.||.                     .||.||    
Zfish   557 IGVSVVLFLVSRFSPYEWHL----DDNEETKDPQ---------------------TPPDPP---- 592

  Fly   707 QTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAAASW 771
                                        |:|.::||.||||.||||||||:||||:||||....|
Zfish   593 ----------------------------NDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVW 629

  Fly   772 FFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNKM 836
            :|||||:||||||||||||||||||:||.|.||||.|||:.||||..|||.:|||||:|.::.||
Zfish   630 WFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKM 694

  Fly   837 WEYMNSRK-HVFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGFGIA 900
            |.||.|.: .|||.|..:|:.|||.||||:|.|:||..|||:..|:||||||||.|||:||:|:|
Zfish   695 WSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVA 759

  Fly   901 TPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSELSL 953
            ||.||||:.|:|||||.|.|.|.|.||:|||||:|.||.|...|    |::||
Zfish   760 TPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGTKDSG----SKVSL 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 129/440 (29%)
ANF_receptor 55..461 CDD:279440 121/411 (29%)
PBP2_iGluR_AMPA 497..938 CDD:270433 243/441 (55%)
Lig_chan 632..967 CDD:278489 170/323 (53%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 133/460 (29%)
ANF_receptor 39..382 CDD:279440 121/412 (29%)
PBP2_iGluR_AMPA 415..797 CDD:270433 243/441 (55%)
Lig_chan 547..810 CDD:278489 170/323 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590951
Domainoid 1 1.000 371 1.000 Domainoid score I851
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37353
Inparanoid 1 1.050 698 1.000 Inparanoid score I657
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D89427at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm6377
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.770

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