DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIB and Grik3

DIOPT Version :9

Sequence 1:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:1010 Identity:327/1010 - (32%)
Similarity:501/1010 - (49%) Gaps:195/1010 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WPSFLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFE-------QGTDEVQSAFKYA--MLNH 66
            |..||:...|.....|           :...|.:|.|||       |..:..:.||:::  ::|.
Mouse    16 WAGFLVCAFWIPDSRG-----------MPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINR 69

  Fly    67 N---LNVSSRRFELQAYVDVINTADAFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQM 128
            |   |..::..:::|.    |:..|:|:.::..|:|.:.||.::.|.......:.:.|..|..::
Mouse    70 NRTLLPNTTLTYDIQR----IHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEV 130

  Fly   129 PFVTPWFPEKVLTPSSGFLDFALSMRPDY---HQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIY 190
            |.:...:....|....   .|.:::.|||   ..||:|.:|...||....:||...||:|||::.
Mouse   131 PHIQLRWKHHPLDNKD---TFYVNLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELI 192

  Fly   191 QGLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQILIQHVRDLRLG 255
            ......|...::..:...|:.|..:     |:::.|.....|:.||...||.|||.|   .:.:|
Mouse   193 MAPSRYNIRLKIRQLPIDSDDSRPL-----LKEMKRGREFRIIFDCSHTMAAQILKQ---AMAMG 249

  Fly   256 RRT--YHYLLSGLVMDDRW--ESEIIEFGAINITGFRIVDTNRRLVREFYDSW--KRLD--PQMS 312
            ..|  ||::.:.|   |.:  :.|...:..:|:|||||::.:...|....:.|  :||.  |:..
Mouse   250 MMTEYYHFIFTTL---DLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWAMERLQAAPRAE 311

  Fly   313 VGAGRESISAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYS 377
            .|.....:...|||:||||.::...:               ||..|                   
Mouse   312 SGLLDGVMMTDAALLYDAVHIVSVCY---------------QRAPQ------------------- 342

  Fly   378 ASGGGGGNGGAGGGFAGSDSGGSGGMASRALDCNTAKGWVNAWEHGDKISRYLRKVEIEGLTGDI 442
                                     |...:|.|:..|    ||..|.:...::::.:.|||||.|
Mouse   343 -------------------------MTVNSLQCHRHK----AWRFGGRFMNFIKEAQWEGLTGRI 378

  Fly   443 KFN-DDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRPHV-EFEKNRTYIVTTV 505
            .|| ..|.|.::.|.::.:. ...:.||..|:...||........| .|:| :...||:.|||||
Mouse   379 VFNKTSGLRTDFDLDIISLK-EDGLEKVGVWSPADGLNITEVAKGR-GPNVTDSLTNRSLIVTTV 441

  Fly   506 LEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDG 570
            ||||::|.::  ....|:||:||||||.||...||..||.:||:|||:||.||::...  |.|:|
Mouse   442 LEEPFVMFRK--SDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDK--GQWNG 502

  Fly   571 MVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWV 635
            ||.||:..:||:|:|.:|||..||:.||||||||:||:||:.:||....|.||||:||||.:||:
Mouse   503 MVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWM 567

  Fly   636 SVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPG 700
            .|:.:|:|||.|||.::||||:||.            |.|                    |..||
Mouse   568 YVLLAYLGVSCVLFVIARFSPYEWY------------DAH--------------------PCNPG 600

  Fly   701 PPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGR 765
                                         |..|.|.|::.|||||.:.:.||||.:|.|:::|.|
Mouse   601 -----------------------------SEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTR 636

  Fly   766 IAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQI 830
            |....|:|||||:|||||||||||||||||.:||:|.:|||.||:::||.:..|:|..||::|:|
Mouse   637 IIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSKI 701

  Fly   831 GLHNKMWEYMNSRKHVFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTK 895
            ....|||.:|:|:....|...:|||:|...:  .||||:||...||:..|. |:..::|..:|:|
Mouse   702 STFEKMWAFMSSKPSALVKNNEEGIQRTLTA--DYALLMESTTIEYITQRN-CNLTQIGGLIDSK 763

  Fly   896 GFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECSTHKDGETSHSELSLSNVAGIF 960
            |:||.||:||..:|.|.:|:|.|:|..:|..::.||| ..:.|...::.|.  |.|.:..:.|||
Mouse   764 GYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSGCPEEENKEA--SALGIQKIGGIF 825

  Fly   961 YILIGGLLVSVFVAILEYCFR-----SRDSRSASS 990
            .:|..||::||.||:.|:.::     .|:.||..|
Mouse   826 IVLAAGLVLSVLVAVGEFIYKLRKTAEREQRSFCS 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 104/458 (23%)
ANF_receptor 55..461 CDD:279440 96/422 (23%)
PBP2_iGluR_AMPA 497..938 CDD:270433 193/440 (44%)
Lig_chan 632..967 CDD:278489 126/334 (38%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 107/464 (23%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 193/436 (44%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846183
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.650

Return to query results.
Submit another query.