DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and GLR2.1

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:991 Identity:189/991 - (19%)
Similarity:350/991 - (35%) Gaps:258/991 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SIRLGLITDDATDRIRQT----------FEHAISVVNNELGVPLVGETEQVAYGNSVQAFAQLCR 87
            ::.:|::.|..|.....|          |..:.......|...:|.....|.    ..|.|.|..
plant    31 NVNVGIVNDIGTAYSNMTLLCINMSLSDFYSSHPETQTRLVTTVVDSKNDVV----TAAAAALDL 91

  Fly    88 LMQSGVGAVFGPAARHTASHLLNACDSKDIPFI-----YPHLSWGSNPDGFNLHPSPEDIANALY 147
            :....|.|:.||.....|..::.......:|.:     .|.|:...:...|..........:|:.
plant    92 ITNKEVKAILGPWTSMQAQFMIEMGQKSQVPIVTYSATSPSLASIRSQYFFRATYDDSSQVHAIK 156

  Fly   148 DIVNQFEWSRFIFCYESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYKSVLRRIRKSED-- 210
            :|:..|.|......|....:.:         ||...:..|:: ::|:...|::|:......::  
plant   157 EIIKLFGWREVAPVYVDDTFGE---------GIMPRLTDVLQ-EINVRIPYRTVISPNATDDEIS 211

  Fly   211 ----------SRIVVVGSTTGVAELL-----RQAQQVGIMNEDYTYIIGNLNLHTFDLEEYKYSE 260
                      :|:.||    .:.|||     .:|.::|:|.:.|.:|:.|.......:......|
plant   212 VELLRMMTLPTRVFVV----HLVELLASRFFAKATEIGLMKQGYVWILTNTITDVLSIMNETEIE 272

  Fly   261 A--NITGIRMFSPDQEEVRDLMEKLHQE---------------------LGESEPVNSGSTFITM 302
            .  .:.|::.:.|..:|:.:...:..:.                     |...|...|..||:.|
plant   273 TMQGVLGVKTYVPRSKELENFRSRWTKRFPISDLNVYGLWAYDATTALALAIEEAGTSNLTFVKM 337

  Fly   303 EMALTYDAVRVIAETTKHL---PYQPQMLNCSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYF 364
                  ||.|.::| .:.|   .|.|::|....|                   ::.:.:.|...|
plant   338 ------DAKRNVSE-LQGLGVSQYGPKLLQTLSR-------------------VRFQGLAGDFQF 376

  Fly   365 EGNVRKGFTFDVIELQTSGLVKVGTW--EEG--KDFEFQRPPQAVNFNDIDD------------- 412
            .....:...|:::.:...|...:|.|  |.|  |:.: |:|.....|:...|             
plant   377 INGELQPSVFEIVNVNGQGGRTIGFWMKEYGLFKNVD-QKPASKTTFSSWQDRLRPIIWPGDTTS 440

  Fly   413 ----------------GSLVNKTFIVLISVATKPYASLVESIDTLIGNNQFQGYGVD----LIKE 457
                            |..||.||...:. ||:         |.:..:..|.|:.:|    :|:.
plant   441 VPKGWEIPTNGKRLQIGVPVNNTFQQFVK-ATR---------DPITNSTIFSGFSIDYFEAVIQA 495

  Fly   458 LADKLGFNF-TFRDGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFM 521
            :...:.::| .|:|||.|            .::.::..|:.|..:.|.||:|.|...:|||:|:.
plant   496 IPYDISYDFIPFQDGGYD------------ALVYQVYLGKYDAVVADTTISSNRSMYVDFSLPYT 548

  Fly   522 NLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVS-LCFFIIG--------RLSPIEWD 577
            ..|:.::.........:...|:.|.:..:||        :| |.|||||        |::| ::|
plant   549 PSGVGLVVPVKDSVRRSSTIFLMPLTLALWL--------ISLLSFFIIGLVVWVLEHRVNP-DFD 604

  Fly   578 NPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAP--KALS--TRTISAIWWFFTLIMVSSY 638
            .|           .|:.::...||:...::     .||  :.||  .|.:..||:|..|::..||
plant   605 GP-----------GQYQLSTIFWFSFSIMV-----FAPRERVLSFWARVVVIIWYFLVLVLTQSY 653

  Fly   639 TANLAAFLTIENPTSPINSVKDLADNKDDVQY------GAKRTGSTRNFFSTSEEPIYIKMNEYL 697
            ||:||:.||.::....:.::..|....:.|.|      |..|...    ||.:....|....   
plant   654 TASLASLLTTQHLHPTVTNINSLLAKGESVGYQSSFILGRLRDSG----FSEASLVSYGSPE--- 711

  Fly   698 NAHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTK-VGDPLDEKGYGIAMVKNWP 761
              |.:.|:...|      ..|...|.|||...:.....:.||..| |..|....|.|.......|
plant   712 --HCDALLSKGQ------AEGGVSAVLMEVPYVRIFLGQYCNKYKMVQTPFKVDGLGFVFPIGSP 768

  Fly   762 YRDKFNKALLELQEQGVLARLKNKWWNEVGAGVC--SAKSDDDGPS----ELGVDNLSGIYVVLV 820
            .....::|:|:::|.....:|:|.|:..:... |  ...:.|..||    :||.|:...::    
plant   769 LVADISRAILKVEESNKANQLENAWFKPIDES-CPDPLTNPDPNPSVSFRQLGFDSFWVLF---- 828

  Fly   821 IGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERPLKSAQSIYSRSRNSS- 884
               :::.|:..:....|||:..|.                   :.|:|.|:.....::.....| 
plant   829 ---LVAAIVCTMALLKFVYQFLKE-------------------NPNQRNLRVLWEKFNEPDQKSY 871

  Fly   885 -QSIESLKTDSEENMP 899
             :.:...:..|.:.||
plant   872 IKDVTKCQCSSGQGMP 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 71/423 (17%)
ANF_receptor 46..380 CDD:279440 62/391 (16%)
PBP2_iGluR_Kainate 417..788 CDD:270432 93/395 (24%)
Lig_chan 549..819 CDD:278489 70/295 (24%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361 66/405 (16%)
ANF_receptor 49..392 CDD:279440 61/386 (16%)
GluR_Plant 452..794 CDD:270404 94/403 (23%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 59/243 (24%)
Lig_chan 576..835 CDD:278489 71/306 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.930

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