DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and GLUR2

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:999 Identity:209/999 - (20%)
Similarity:389/999 - (38%) Gaps:217/999 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WI----SLIILSLSRVQAQFYGGNAYEASSGQSIRLGLITDDATDRIRQTFEHAISVVNNELGVP 65
            |:    |.|:|....:.::..|........|....||.:..:.|:...:..|..::...:.||..
plant     3 WVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSDPSFLGGS 67

  Fly    66 LVGETEQVAYGNSVQAFAQLCRLMQSGVGAVFGPAA---RHTASHLLNACDSKDIPF--IYPHLS 125
            .:..|...|..|.........:.|::...|:.||..   .|..|||.|......:.|  :.|.||
plant    68 KLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVPMLSFTALDPSLS 132

  Fly   126 WGSNPDGFNLHPSPED--IANALYDIVNQFEWSRFIFCYESAEYLKILDHLMTRYGIK--GPVIK 186
            ....|  |.:..:|.|  :..|:.::::.:.||..|..|.        |...:|.||.  |..::
plant   133 ALQFP--FFVQTAPSDLFLMRAIAEMISYYGWSEVIALYN--------DDDNSRNGITALGDELE 187

  Fly   187 VMRYDLNLNGNYKSVL---------RRI------RKSEDSRIVVVGS--TTGVAELLRQAQQVGI 234
            ..|..:    :||:||         |.|      .:..:||:::|.:  .|| .::..:||::|:
plant   188 GRRCKI----SYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTG-KKIFEEAQKLGM 247

  Fly   235 MNEDYTYI-----------IGNLNLHTFDLEEYKYSEANITGIRMFSPDQEEVRDLMEKLHQELG 288
            |.:.|.:|           :..|...|.:      |...:..:|:.:|:.::.:|.:.:.::   
plant   248 MEKGYVWIATTWLTSLLDSVNPLPAKTAE------SLRGVLTLRIHTPNSKKKKDFVARWNK--- 303

  Fly   289 ESEPVNSGSTFITMEMALTYDAVRVIAETTKHLPYQPQMLNCSERHD-----------------N 336
                :::|:..:.:.....||.|.:||...|.|  .....|.|...|                 :
plant   304 ----LSNGTVGLNVYGLYAYDTVWIIARAVKRL--LDSRANISFSSDPKLTSMKGGGSLNLGALS 362

  Fly   337 VQPDGSTFRNYMRSLEIKEKTITGRIYF---EGNVRKGFTFDVIELQTSGLVKVGTWEEGKDFEF 398
            :...||.|.:|:  :......:||:|.|   ...::.  ::|:|.:...|..::|.|........
plant   363 IFDQGSQFLDYI--VNTNMTGVTGQIQFLPDRSMIQP--SYDIINVVDDGFRQIGYWSNHSGLSI 423

  Fly   399 QRPPQAVNFNDIDDGSLVNKTFIVL---------------------ISVATKPYASLVESIDTLI 442
             .||::: :..:.:.|..|:....:                     :.:.....||..|.:..|.
plant   424 -IPPESL-YKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLD 486

  Fly   443 GNNQFQGYGVDL----IKELADKLGFNFTFRDGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITD 503
            |:|:.|||.:|:    :|.::..:...|.....|....:||:..|:       :..|..|..:.|
plant   487 GSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNN-------VTIGVFDAVVGD 544

  Fly   504 LTITSEREEVIDFSIPFMNLGIAILYVKP-QKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFI 567
            :.|.::|..::||:.|::..|:.:  |.| .|.....::|:.||:..:|        .|:..||:
plant   545 IAIVTKRTRIVDFTQPYIESGLVV--VAPVTKLNDTPWAFLRPFTPPMW--------AVTAAFFL 599

  Fly   568 IGRLSPIEWDNPYPCIEEPEELENQF------TINNSLWFTTGALLQQGSEIAPKALSTRTISAI 626
            |  :..:.|      |.| ..:.::|      .|...|||:...:.....|.....|. |.:..|
plant   600 I--VGSVIW------ILE-HRINDEFRGPPRKQIVTILWFSFSTMFFSHRENTVSTLG-RAVLLI 654

  Fly   627 WWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGS-TRNFFSTSEEPIY 690
            |.|..||:.|||||:|.:.||::...|||..|..|..:...|.:   :.|| ..|:         
plant   655 WLFVVLIITSSYTASLTSILTVQQLNSPIRGVDTLISSSGRVGF---QVGSYAENY--------- 707

  Fly   691 IKMNEYLNAHPEML--MENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYG 753
              |.:.||.....|  :.:.::....:::||..|.:.|...::......|.....|......|:|
plant   708 --MIDELNIARSRLVPLGSPKEYAAALQNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWG 770

  Fly   754 IAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVV 818
            .|..::.|.....:.|:|.|.|.|.|.::.:||.:.......:....|:...:|.:.:..|:::|
plant   771 FAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLV 835

  Fly   819 LVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRF-----SENERPLKSAQSIYS 878
            ..|...|::.|      ||                   |:||..|     .:.|..:.|.:|  |
plant   836 CGISCFIALFI------YF-------------------FKIVRDFFRHGKYDEEATVPSPES--S 873

  Fly   879 RSRNSSQSIESLKT-----DSEEN 897
            ||:       ||:|     |.:|:
plant   874 RSK-------SLQTFLAYFDEKED 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 84/418 (20%)
ANF_receptor 46..380 CDD:279440 78/390 (20%)
PBP2_iGluR_Kainate 417..788 CDD:270432 92/405 (23%)
Lig_chan 549..819 CDD:278489 63/278 (23%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 85/424 (20%)
GluR_Plant 466..804 CDD:270404 90/378 (24%)
Lig_chan 590..840 CDD:395014 65/281 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.780

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