DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and GLR3.6

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:962 Identity:211/962 - (21%)
Similarity:367/962 - (38%) Gaps:223/962 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LGLITDDATDRIRQTFEHAISVVNNELGVPLVGETEQVAYGNSVQAFAQLCRLMQSGVGAVFGP- 99
            :|.:...|.|...:....:.|::|......::.:|:.    |...:..:..:.|:|...|:.|| 
plant    42 IGKVIKVAMDAAVEDVNASPSILNTTTLRIIMHDTKY----NGFMSIMEPLQFMESETVAIIGPQ 102

  Fly   100 ---AAR---HTASHL------LNACDSKDIPFIYPHLSWGSNPDGFNLHPSPEDIANALYDIVNQ 152
               .||   |.|:.|      .:|.|....|..:|.....|..|.|.:        .|:.|||..
plant   103 RSTTARVVAHVATELKIPILSFSATDPTMSPLQFPFFIRTSQNDLFQM--------AAIADIVQF 159

  Fly   153 FEWSRFIFCYESAEYLKILDHLMTRYGIK--GPVIKVMRYDLNLNG---------NYKSVLRRIR 206
            :.|...:..|...:|        .|.|:.  |..:...|..::...         |...:|.::.
plant   160 YGWREVVAIYGDDDY--------GRNGVAALGDRLSEKRCRISYKAALPPAPTRENITDLLIKVA 216

  Fly   207 KSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGN-----------LNLHTFDLEEYKYSE 260
            .||...|||..|.....||...|:.:|:|:..|.:|..|           |.|.|.:        
plant   217 LSESRIIVVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPLDTIN-------- 273

  Fly   261 ANITGI---RMFSPDQEEVRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRVIAETTK--- 319
             ||.|:   |:.:|:....::.:::.|         |.....::......||.|.::|:...   
plant   274 -NIQGVITLRLHTPNSIMKQNFVQRWH---------NLTHVGLSTYALYAYDTVWLLAQAIDDFF 328

  Fly   320 ----HLPYQPQMLNCSERHDNVQPD-------GSTFRNYMRSLEIKEKTITGRIYF--EGNVRKG 371
                ::.:....:.......|:..|       |..|...:  |::....:|||:.|  :.|:...
plant   329 KKGGNVSFSKNPIISELGGGNLHLDALKVFDGGKIFLESI--LQVDRIGLTGRMKFTSDRNLVNP 391

  Fly   372 FTFDVIELQTSGLVKVGTW-------------EEGKDFEFQR------PPQAVNFNDIDDGSLV- 416
             .|||:.:..:|...:|.|             .|...|..|:      |..::.   |..|.:. 
plant   392 -AFDVLNVIGTGYTTIGYWFNHSGLSVMPADEMENTSFSGQKLHSVVWPGHSIK---IPRGWVFS 452

  Fly   417 NKTFIVLISVATKPYASLVESIDTLIGNNQFQGYGVDL----IKELADKLGFNFTFRDGGNDYGS 477
            |....:.|.|   |.....|.:.::..|....|:.||:    |..|...:.|.......|:|   
plant   453 NNGRHLRIGV---PNRYRFEEVVSVKSNGMITGFCVDVFIAAINLLPYAVPFELVAFGNGHD--- 511

  Fly   478 FNKTTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKP-QKAPPALFS 541
                ..|.|.:::.|..|..|..:.|:||.:||.::.||:.|::..|:.:  |.| :|...:..:
plant   512 ----NPSNSELVRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVV--VAPVRKLGSSAMA 570

  Fly   542 FMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIEWDNPYPCIEEPEELENQF------TINNSLW 600
            |:.||:.::||....::|       |:|   .:.|     |:|...  .::|      .:..:.|
plant   571 FLRPFTPQMWLIAAASFL-------IVG---AVIW-----CLEHKH--NDEFRGPPRRQVITTFW 618

  Fly   601 FTTGALLQQGSEIAPKALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNK 665
            |:...|.....|.....|. |.:..||.|..||:.|||||:|.:.||:...:|||..::.|..|.
plant   619 FSFSTLFFSHRETTTSNLG-RIVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNH 682

  Fly   666 DDVQYGAKRTGS-TRNFFSTSEEPIYIKMNEYLNAHPEMLME-NNQQGVDKV------KSGTKYA 722
            |.:.|   ..|| .|::.          ::| ||.|...|:. .:.:..||.      |.|.. |
plant   683 DPIGY---PQGSFVRDYL----------IHE-LNIHVSRLVPLRSPEEYDKALRDGPGKGGVA-A 732

  Fly   723 FLMESTSIEFNTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWW 787
            .:.|...||......|....||....:.|:|.|..:|.|.....:.|:|:|.|.|.:.|:::|| 
plant   733 VVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKW- 796

  Fly   788 NEVGAGVCSAKSDDDGPSELGVDNLS-----GIYVVLVIGSIISIIISILCWCYFVYKKAKNYEV 847
              :....||.:.     :|:.||.|.     |::||..:..::::.:               |.|
plant   797 --LLRKACSLQG-----AEIEVDRLELKSFWGLFVVCGVACVLALAV---------------YTV 839

  Fly   848 PFCDALAEEFRIVIRFSENERPLKSAQSIYSRSRNSSQ--SIESLKTDSEEN 897
                       ::||....:.|.::..||..||..|::  |..|...:.||:
plant   840 -----------LMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLSFVKEKEED 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 82/427 (19%)
ANF_receptor 46..380 CDD:279440 75/387 (19%)
PBP2_iGluR_Kainate 417..788 CDD:270432 101/389 (26%)
Lig_chan 549..819 CDD:278489 75/288 (26%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.780

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