DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and Ir7f

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster


Alignment Length:716 Identity:124/716 - (17%)
Similarity:242/716 - (33%) Gaps:231/716 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 YKSVLRRIRKSEDSRIVVVGSTTG--VAELLRQAQQVGIMNEDYTYIIGNLN------LHTFD-- 252
            |||.|      |:|||.:.|....  ||..||...: .::.:..|.::..::      .|.|:  
  Fly    22 YKSYL------ENSRIDMQGEDANLYVARALRLVIE-NVLAQLSTTLVVTISTRHLGTAHWFEYM 79

  Fly   253 ----LEEYKYSEANITGIRMFSPD--------QEEVRDLMEKLHQELGESEPVNSGSTFITMEMA 305
                ::.::.....:..||   ||        ::.|..||...:|.|.::....|.:.|...   
  Fly    80 MNILMDSWRMVAVQLLRIR---PDLVVNPVPGRKRVSLLMVDSYQGLLDTNITASNANFDDP--- 138

  Fly   306 LTYDAVRVIAETTKHL-PYQPQML--NCSER---HDNVQPDGSTFRNYMRSLEIKEKTITGRIYF 364
               |...:..:...|| |.:.|::  :|...   |.||.         :::.:::....|...|.
  Fly   139 ---DYYFIFLQARDHLIPKELQLILDHCLAHFWLHCNVM---------IQTAQVEVLVYTYYPYT 191

  Fly   365 EGNVRKGF-----TFDVIELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLI 424
            ....:|.:     |||..:           |:..:.|.             |..|.::...:.::
  Fly   192 ADACQKAYPIPVNTFDGRK-----------WKASQMFP-------------DKLSQMHGCPLTVL 232

  Fly   425 SVATKPYASLVESIDTLIGNNQFQGYGVDLIKELADKLGFNF------TFRDGGNDYGSFNKTTN 483
            :....|:..||  .|.....::..|:.:.|::.||.::.|:.      ..|.     .::.....
  Fly   233 TWHQPPFVELV--WDPKHNRSRGSGFEIQLVEHLARRMNFSLELVNIALLRP-----NAYRLAEG 290

  Fly   484 STSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLG-IAILYVKPQK-APPALFSFMDPF 546
            |:.|.::::::...::::.....|:.|.:::...:.:.:.. :|:|.::..: ...||..|  ||
  Fly   291 SSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVF--PF 353

  Fly   547 SSEVWLYLGIA---YLGVSLCFFIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGAL-- 606
            ...||:.|.:|   :||:.|                 |......|.:.           .|.|  
  Fly   354 ELSVWMLLLLALLIHLGIHL-----------------PSARRGNEEDG-----------GGGLQV 390

  Fly   607 --LQQGSEIA--PKALSTRTISAIW-W------------FFTLIMVSSY---------------- 638
              |..|:.:|  |::...|.|:|.| |            .|.||.:..|                
  Fly   391 VALLLGAALARLPRSWRHRFIAAHWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEGFQ 455

  Fly   639 ---TANLAAFLTIENPTSPINSVKDLADNKDDVQ----------YGAKRTGSTRNFFSTSEEPIY 690
               |||....| :|.|        .||.:.|.:|          .........|..|:.:.:.:.
  Fly   456 GICTANTQRLL-LEMP--------QLARDPDSIQSVDTPFDWDVLNVLTRNRNRKIFAVANQDVT 511

  Fly   691 IKMNEYLNAHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIA 755
            :.. .:.:|||.                            .|:.|::        |::.:..|:.
  Fly   512 LSF-LHSSAHPN----------------------------AFHVVKQ--------PVNVEYAGMY 539

  Fly   756 MVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDN--LSGIYVV 818
            |.|:....:|.:..:..|...|.:..     |..........|......|...:::  |||||:|
  Fly   540 MPKHSFLYEKMDDDIRRLDASGFIHA-----WRRASFASVHRKEQVHMTSRRYINHAKLSGIYMV 599

  Fly   819 L 819
            :
  Fly   600 M 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 43/231 (19%)
ANF_receptor 46..380 CDD:279440 42/214 (20%)
PBP2_iGluR_Kainate 417..788 CDD:270432 69/429 (16%)
Lig_chan 549..819 CDD:278489 56/322 (17%)
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 21/135 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462863
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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