DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and Ir7e

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster


Alignment Length:443 Identity:91/443 - (20%)
Similarity:171/443 - (38%) Gaps:110/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 PYASLVESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFRDGGNDYGSFNKTTNSTSGMLKEIVE 494
            |:.:|.|..:.::..|  .||...|:..||:|:.|....|         ....|.....|:.:..
  Fly   221 PFLTLDEDQEEVLRVN--GGYEGRLLLALAEKMNFTIAVR---------KVHVNMRDEALEMLRR 274

  Fly   495 GRADLAITDLTITSEREEVIDFSIPFMN----LGI-AILYVKPQKAPPALFSF---MDPFSSEVW 551
            ...||.:..:..|..|..|...|..:..    .|: |..|        .|.||   ..|:..::|
  Fly   275 DEVDLTLGGIRQTVARGMVATSSHNYHQTREVFGVLASSY--------ELSSFDILFYPYRLQIW 331

  Fly   552 L-YLGIAYLGVSLCFFIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAP 615
            : .||:..|. :|...|:||:.             .|.:.::|.:|..|.|....||:     .|
  Fly   332 MGILGVVALS-ALIQLIVGRML-------------RERMGSRFWLNLELVFVGMPLLE-----CP 377

  Fly   616 KALSTRTISAIWWFFTLIMVSSYTANLAAFL----------TIEN--------PTSPINSVKDLA 662
            ::.:.|....:...:|||:.:.|...|...:          |||:        ..:||  |:::.
  Fly   378 RSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESLVQKNFTVVLTPI--VQEVL 440

  Fly   663 DNKDDVQYGAKRTGSTRNFFSTSE-EPIY-IKMNEYLNAHP-----EMLMENNQQGVDKVK---- 716
            |....||:...|.     ..:.|| :|:| ::.|..|..|.     ::.:..|:...|||.    
  Fly   441 DEIPSVQHMRFRL-----LEANSELDPLYFLEANHQLRQHVTASALDIFIHFNRLSADKVHQRGE 500

  Fly   717 --SGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVL 779
              ||..:..:.|.       :....||            :.:.|:....|:.|:.::.::..|:|
  Fly   501 QGSGAHFEIVPED-------IISMQLT------------MYLAKHSFLIDQLNEEIMWMRSVGLL 546

  Fly   780 ARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISIL 832
            : :.::|  |:..   |...::.....||...|..|::::::|.|:.:::.||
  Fly   547 S-VWSRW--ELSE---SYLRNEQSFQVLGTMELYAIFLMVLVGLIVGLLVFIL 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377
ANF_receptor 46..380 CDD:279440
PBP2_iGluR_Kainate 417..788 CDD:270432 81/397 (20%)
Lig_chan 549..819 CDD:278489 60/301 (20%)
Ir7eNP_001138176.1 PBPb 218..>313 CDD:214497 22/102 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462847
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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