DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and grin3a

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:896 Identity:191/896 - (21%)
Similarity:368/896 - (41%) Gaps:181/896 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LITDDATDRI------RQTFEHAISVVNNELGVPLVGETEQVAYGNS--------VQAFAQLCR- 87
            |:..::.:|:      ..|.|..::|   |.|   :||....::.:|        |.....:|. 
Zfish   134 LLASESLNRVAGLLPYNLTLEIVMAV---EAG---LGELPAFSFSSSSTPACADPVSFLQSVCHT 192

  Fly    88 LMQSGVGAVFG-PAARHTASHLLNACDSKDIPFIYPHLSWGSNPDGFNLH-----PSPE-DIANA 145
            ::..||.|:.. |..|.....|.....:..||.|....|.........||     .:|: ..||.
Zfish   193 VIVQGVSAIISFPQNRDELVKLEFIASTLQIPVISVVQSEFQRQTQNLLHFQMAMQNPQTSQANL 257

  Fly   146 LYDIVNQFEW--SRFIFCYES--AEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYKSVLRRIR 206
            ::.:::...|  ...:.|.:.  ::::.:| |..:::.: |.|:|:.....:.|..:..:..::.
Zfish   258 IFSLLSMNNWFDVSLVMCQQMNISDFVFLL-HNNSKFHL-GTVLKISTNSSSKNDFHIFLQAQLE 320

  Fly   207 KSEDSRIVVVGSTTGVAELLR---QAQQVGIMNEDYTYIIGNLNLHTFDLEEYKYSEANITGI-- 266
            ..:||...:|.....:.::.|   ...:.|::..||.:|||:    :.::||.: :|....|:  
Zfish   321 SIKDSTSTLVTFGCDIRDIRRIFTTIAKFGLILPDYHWIIGD----SQNVEELR-TEGLPMGLLA 380

  Fly   267 --RMFSPDQEE-VRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRVIAETTKHLPYQPQML 328
              ||..|..:. |:|.:|.:.:.:|.:..|:.       ::||.                 |...
Zfish   381 HGRMGEPSLDHYVQDALELVARAVGSAATVSP-------QLALI-----------------PGTT 421

  Fly   329 NCSERHDNVQPDGSTF-RNYMRSLEI----------KEKTITGRIYFEGNVRKGFTFDVIELQTS 382
            ||..|.:.......|| ..||.|...          :|.||         :.:...| :..||..
Zfish   422 NCLARLEAKNLTSGTFLSRYMASTSFDGLSGCISVQEESTI---------ISESHHF-IWNLQHD 476

  Fly   383 GL-----VKVGTWEEGK------------------------------------DFEFQRPPQAVN 406
            .:     .::|:|:.||                                    .|.|.|      
Zfish   477 PIGKPMWTRLGSWKHGKVVMDYGVWPNKRRSQPGADWRHSSRLHLRVVTLVEHPFVFTR------ 535

  Fly   407 FNDIDDGSLVNKTFIVLISVATKPYASLVESI-DTLIGNN-----QFQ----GYGVDLIKELADK 461
              |:||..|.....:.|..:...  .:|:||: ..|.|.|     :|:    ||.:||:::||:.
Zfish   536 --DVDDEGLCPAGQLCLDPLTND--TALLESLFQGLQGANDTVPLEFKKCCYGYCIDLLEKLAED 596

  Fly   462 LGFNF-TFRDGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGI 525
            :||:| .:..|...||::.  ....:|::.:::.|.|.||:|..:|.|.|.:||||:.||.:..:
Zfish   597 MGFDFDLYIVGDGKYGAYK--NGRWTGLVGDLMSGAAHLAVTSFSINSARSQVIDFTSPFFSTSL 659

  Fly   526 AILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIEWDNPYPCIEEPEELE 590
            .|| |:.:.....:.:||.|....:||.:.:: |.|:..|     |:..||.:|:.........:
Zfish   660 GIL-VRTRDTAAPIGAFMWPLHWSMWLGIFVS-LHVTAVF-----LTLYEWKSPFGMTPRGRNRD 717

  Fly   591 NQFTINNSLWFTTGALLQQGSEI-APKALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSP 654
            ..|:.:::|......|..:.:.| .||..:.|.:..:|..|.|..:|:|||||||.:..|.....
Zfish   718 RVFSFSSALNVCYAILFGRTAAIKPPKCWTGRFLMNLWAIFCLFCLSTYTANLAAVMVGEKTYEQ 782

  Fly   655 INSVKD--LADNKDDVQYGAKRTGSTRNFFSTSEEPIYIKMNEYLNAHPEMLMENNQQGVDKVKS 717
            ::.:.|  |.......::|..|..|..::...|    :.:|:||:..:.   ......|:|.:|.
Zfish   783 LSGIHDPKLHHPSQGFRFGTVRESSAEDYVKKS----FPEMHEYMRRYN---APTTPDGIDHLKD 840

  Fly   718 GTKY--AFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLA 780
            ..:.  ||:|:...:::    ..:..|....|...||||.:.:|.|.....::.:.:.:..|.:.
Zfish   841 DPQKLDAFIMDKALLDY----WAHADKXYISLLLTGYGIGLKQNSPLTSNISELVSQYKSDGFMD 901

  Fly   781 RLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISI 831
            .|.:||:..|..|..|....:  ..::|:.:.||::|:|.:|..:|::.::
Zfish   902 MLHDKWYKVVPCGKRSFAVTE--TLQMGIKHFSGLFVMLCVGVALSLLTTL 950

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 78/444 (18%)
ANF_receptor 46..380 CDD:279440 71/378 (19%)
PBP2_iGluR_Kainate 417..788 CDD:270432 96/386 (25%)
Lig_chan 549..819 CDD:278489 62/274 (23%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 78/414 (19%)
ANF_receptor 132..452 CDD:279440 68/354 (19%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 102/419 (24%)
Lig_chan 682..941 CDD:278489 63/277 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591312
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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