DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and grik4

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:894 Identity:284/894 - (31%)
Similarity:468/894 - (52%) Gaps:82/894 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WISLIILSLSRVQAQFYGGNAYEASSGQ-SIRLGLITDDAT-----DRIRQTFEHAISVVNNELG 63
            |..|:.|::.          ...|:||. |.|:..|.||..     :|:..|.  |...:|....
Zfish     5 WAPLLFLAMW----------VRNATSGPLSFRIAAILDDPMECSRGERLAITL--AKDSINRSSN 57

  Fly    64 VPLVGETE----QVAYGNSVQAFAQLCRLMQSGVGAVFGPAARHTASHLL-NACDSKDIPFI--- 120
            ....|:.|    ::...:..:....:|::|..||.||.||:|...::.:: |.|..|::|::   
Zfish    58 RSTTGKLEVDIFELLRDSEYETGETMCQIMSKGVVAVLGPSASPASNSIISNICGEKEVPYVKVA 122

  Fly   121 --------YPHLSWGSNPDGFNLHPSPEDIANALYDIVNQFEWSRFIFCYESAEYLKILDHLMTR 177
                    :|..:      ..:|.|:..||:.|:..::..|..|........|:.|..|:.|:.:
Zfish   123 PEDILKVQFPRFT------TLDLRPTNTDISMAVAGLLTFFNSSTSCLICAQADCLLNLEVLLRQ 181

  Fly   178 YGIKGPVIKVMRYDLNLNGNYKSVLRRIRKSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYI 242
            :.|....:.|...|.:.:..  .:|:.||..:.:.|:|..:.|....:|.:|.::|:::..||||
Zfish   182 FLISKETLSVRMLDDSQDPT--PLLKEIRDDKTATIIVDANATMSHVILERASELGMLSVYYTYI 244

  Fly   243 IGNLNLHTFDLEEYKYSEANITGIRMFSPDQEEVRDLMEKLHQELGES--------EPVNSGSTF 299
            :.:|......|::......||.|..:|:......:|.:..|::...|:        .|::|    
Zfish   245 LTSLEFSLLRLDDLADQRVNIVGFSVFNRTHPFFQDFVLSLNRSWQENCDHAPFAGTPLSS---- 305

  Fly   300 ITMEMALTYDAVRVIAETTKHLPYQPQM----LNCSERHDNVQPDGSTFRNYMRSLEIKEKTITG 360
                 ||.:|||..:....:.|.....:    |:|  :...:...|::..||:|.:|:  :.:||
Zfish   306 -----ALLFDAVHTVVAAVQELNRSQNVGATQLSC--KSSKIWEHGTSLMNYLRMVEL--EGLTG 361

  Fly   361 RIYFEG-NVRKGFTFDVIELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLI 424
            .|.|.. ..|..:...:::....||.::|.|...:....:|...::|..|    :|.|.| :.:.
Zfish   362 HIEFNSKGQRSNYALRIMQNSRDGLRQIGQWHSEQGLSMERKLPSLNVTD----TLFNTT-LTIT 421

  Fly   425 SVATKPYASLVESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFRDGGNDYGSFNKTTNSTSGML 489
            ::...||..|..:...|.||::::|:.||::|||||.|.|.:..|..|:..........:.:||:
Zfish   422 TILENPYVMLRANHQELEGNDRYEGFCVDMLKELADILKFKYRIRLVGDGVYGVPGANGTWTGMV 486

  Fly   490 KEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYL 554
            .|::..:||||:..||||:|||:|||||.|||.|||:|:|.......|..|||:||||..|||::
Zfish   487 GELISRKADLAVAALTITAEREKVIDFSKPFMTLGISIMYRVHIGRRPGYFSFLDPFSPGVWLFM 551

  Fly   555 GIAYLGVSLCFFIIGRLSPIEWDNPYPCIE-EPEELENQFTINNSLWFTTGALLQQGSEIAPKAL 618
            .:|||.||...|::.||:|.||.||:||:: ....|.||:::.||.||..|..:||||.|||:||
Zfish   552 LLAYLAVSCVLFLVARLTPYEWYNPHPCLKGRCSLLINQYSLGNSFWFPVGGFMQQGSTIAPRAL 616

  Fly   619 STRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFS 683
            |||.:|.:||.||||::||||||||||||::....||.||.|||| :..::||....|||..||.
Zfish   617 STRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLAD-QTAIEYGTMHGGSTMTFFQ 680

  Fly   684 TSEEPIYIKM-NEYLNAHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPL 747
            .|....|.:| |...:..|.:.:::.::|:.:|.: :.||:|:|||..|:...|.||||::|..|
Zfish   681 NSRYQTYQRMWNFMYSKQPSVFVKSTEEGIARVLN-SNYAYLLESTMNEYYRQRNCNLTQIGGLL 744

  Fly   748 DEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNL 812
            |.|||||.|.....|||:|:.|:|.|||:..|..||.|||:   .|.| .|.:|.....||::|:
Zfish   745 DTKGYGIGMPLGSVYRDEFDLAILRLQEENRLEILKRKWWD---GGKC-PKEEDHRAKGLGMENI 805

  Fly   813 SGIYVVLVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVI 861
            .||:||||.|.:::|.:::|.:.:.: :.....|:..|:.:..|.:.::
Zfish   806 GGIFVVLVCGLLVAIFMAVLEFVWML-RHTPGTELSVCEEMLRELQGIV 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 84/395 (21%)
ANF_receptor 46..380 CDD:279440 76/362 (21%)
PBP2_iGluR_Kainate 417..788 CDD:270432 169/372 (45%)
Lig_chan 549..819 CDD:278489 125/271 (46%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 84/396 (21%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 167/361 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590963
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.760

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