DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and grid2

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:936 Identity:233/936 - (24%)
Similarity:433/936 - (46%) Gaps:128/936 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IRLGLITDDATDRIRQTFEHAIS--VVNNELGVPLVGETEQVAY-------GNSVQAFAQLCRLM 89
            |.:|.|.|::..:..:.|..|::  .:|||     :.|||::..       .|..||..:.|.||
Zfish    27 IHIGAIFDESAKKDDEVFRMAVADLNLNNE-----ILETEKITVSVEFVDGNNPFQAVQEACELM 86

  Fly    90 QSGVGAVFGPAARHTASHLLNACDSKDIPFIY--------PHLS----WGSNPDGFNLHPSPEDI 142
            ..|:.|:.......:|..|.:..|:..||.::        |..|    ..:.||.:.|...|...
Zfish    87 NRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPPTTRAQPDDYTLFVRPPVY 151

  Fly   143 AN-ALYDIVNQFEWSRFIFCYESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYKSVLRRIR 206
            .| .::.:|.::.|.:||..|::...::.:::.:.:...:|..:.:.:.:.|:|.....:.|.:|
Zfish   152 LNDVIFQVVMEYTWQKFIIFYDTDYDIRGIENFLDQTSQQGMDVSLQKVESNINMMITGMFRTMR 216

  Fly   207 KSE-----DS--RIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGNLNLHTFDLEE-YKYSEANI 263
            ..|     |:  |.|:..|.......:.:..:..::..|..:||.|..:...|::| ...|...:
Zfish   217 VEELHRYRDTLRRAVLFMSPATAKAFITEVVETNLVAFDCQWIIINEEISDMDVQELVMKSIGRL 281

  Fly   264 TGIRMFSPDQEEVRDLMEKLHQELGES--EPVNSGSTFITMEMALTYDAVRVIAETTKHLPYQPQ 326
            |.:|...|..:.......:.:..:..|  :|.:..:..:.:.....||.|.::|.|. |...:.:
Zfish   282 TLVRQTFPLPQNTSQRCVRNNHRINTSLCDPKDPKAQMLEITNRYIYDTVLLLANTF-HRKLEDR 345

  Fly   327 ------MLNCSERHDNVQPDGSTFRNYMRSLEIKEK----TITGRIYFEGN-VRKGFTFDVI--- 377
                  .|:|..:.......|.:.      ||..:|    .:|..:.|..| ......|:::   
Zfish   346 KWHSMASLSCIRKGSKPWQGGKSM------LETVKKGGVSGLTSLLEFNDNGSNPNIHFEILGTN 404

  Fly   378 --ELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLISVAT---KPYASLVES 437
              |.:..|:.::.||:         |...:| ..:.|..|.|....|::.|.|   :|:..:.|:
Zfish   405 YGEDRGRGVSRLATWD---------PIHGLN-GTLTDRKLENNMRGVVLRVVTVLEEPFVMVSEN 459

  Fly   438 IDTLIGN-NQFQGYGVDLIKELADKLGFNF-TFRDGGNDYGSFNKTTNSTSGMLKEIVEGRADLA 500
            :   :|. .::||:.:|::..||:.|||.: .:....:.||| .:...:.:|::.|:|..|||:.
Zfish   460 V---LGKPKKYQGFSIDVLDALANYLGFKYEIYVAPDHKYGS-QQADGTWNGLIGELVFKRADVG 520

  Fly   501 ITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCF 565
            ::.||||.|||.|:||:..:|:..:.:|..|.::... :|:.:.||...:|..:....|.|....
Zfish   521 LSALTITPERESVVDFTTRYMDYSVGVLLRKAERTVD-MFACLAPFDLSLWACIAGTVLLVGTLV 584

  Fly   566 FIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAPKALSTRTISAIWWFF 630
            ::      :.|.|| |.:  |....:..|:.||:||..|:.:|||.|:....|:||.:..:||.|
Zfish   585 YL------LNWLNP-PRL--PMGSVSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGVWWLF 640

  Fly   631 TLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGS------TRNFFSTSEEPI 689
            .||::|||||||||||||....:.|.|::||| .:.|:.||.....:      ::.......:|:
Zfish   641 ALIVISSYTANLAAFLTISRIENSIQSLQDLA-KQTDLPYGTVLDSAVYDQVRSKGMNPFERDPM 704

  Fly   690 YIKMNEYLN--AHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTV--RECNLTKVGDPLDEK 750
            |.:|...:|  ...|..:|.:::|:.|||.| ::||:.::..:|:..:  .:|:|..|.:.:.::
Zfish   705 YSQMWRMINRTGGAENNVEESKEGIRKVKYG-RFAFVWDAAVLEYVAINDEDCSLYTVSNNVADR 768

  Fly   751 GYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWN-----EVGAGVCSAKSDDDGPSELGVD 810
            |||:||....||||.|::.:||||:.|.:..||.|||.     ::.:.|.:.||.    |.|.:.
Zfish   769 GYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWPRDSPCDLYSPVGTRKSG----SALDIH 829

  Fly   811 NLSGIYVVLVIGSIIS-IIISILCWCYFVYKKAKNYEVPFCDALAE------EFRIVIRFSENER 868
            :.:|::.||..|.::| :|.::..|    :.:.|...||..:...|      ..|:....:|:|.
Zfish   830 SFAGVFFVLAAGVVLSCLIATVETW----WTRRKGSRVPSKEDDKEIDLEHLHHRVNSLCTEDES 890

  Fly   869 PLKSAQSIYSRSRNSSQSIESLKTDS 894
            |.|...:       ||..:..|..||
Zfish   891 PHKQFST-------SSIDLTPLDMDS 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 78/409 (19%)
ANF_receptor 46..380 CDD:279440 72/381 (19%)
PBP2_iGluR_Kainate 417..788 CDD:270432 123/385 (32%)
Lig_chan 549..819 CDD:278489 90/284 (32%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 80/420 (19%)
ANF_receptor 42..404 CDD:279440 71/373 (19%)
PBP2_iGluR_delta_2 440..806 CDD:270449 122/381 (32%)
Lig_chan 568..841 CDD:278489 92/287 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591285
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.740

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