DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and Ir76a

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster


Alignment Length:566 Identity:115/566 - (20%)
Similarity:219/566 - (38%) Gaps:146/566 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 QPQMLNCSERHDNVQPDGSTF----------RNYMRSLEIKEKTITGRIYFEGNVRKGFTFDVIE 378
            ||.:|..:.::.|    .|||          ||:.::.|..|..|..|...:|......|...:.
  Fly   155 QPNILVITSQYLN----SSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDAKGTKATWETQSAMS 215

  Fly   379 LQTSGL----VKVGTWEEGKDF---EFQRPP----QAVNFNDIDDGSLVNKTFIVLISVATKPYA 432
            .:...|    |.:|.::. |.|   ::::||    :.:|..|:    .::.|.|.|:.:..:.|.
  Fly   216 SKMRNLKGREVVIGIFDY-KPFMLLDYEKPPLYYDRFMNTTDV----TIDGTDIQLMLIFCELYN 275

  Fly   433 SLVESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFRDGGNDYGSFNKTTNSTSGMLKEIVEGRA 497
            ..:: :||      .:.|                   |.|:.|     ...|..|::..|::.|.
  Fly   276 CTIQ-VDT------SEPY-------------------DWGDIY-----LNASGYGLVGMILDRRN 309

  Fly   498 DLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSF---MDPFSSEVWLYLGIAYL 559
            |..:..:.:..|..|.:|.:......|:..|.    .||..|.|:   :.||...:|:.:.:..|
  Fly   310 DYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLV----PAPNRLISWTLLLRPFQFVLWMCVMLCLL 370

  Fly   560 GVSLCFFIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWF---------TTGALLQQGSEIAP 615
            ..||...|..|     |::            :.....|| |.         |....:.|.:....
  Fly   371 LESLALGITRR-----WEH------------SSVAAGNS-WISSLRFGCISTLKLFVNQSTNYVT 417

  Fly   616 KALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRN 680
            .:.:.||:....:...:|:.:.|:..|||.||:.......:|.:.|.|:|      ...||:::.
  Fly   418 SSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHK------LIWTGTSQA 476

  Fly   681 FFST----SEEPIYIKMNEYLNAHPEMLM----ENNQQG--VDKVKSGTKYAFLMESTSIEFNTV 735
            :.:|    |.:|:.:.:.|:...:...|:    ...|.|  |::::.|    .|..:..||.:.:
  Fly   477 WITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQFG----HLGNTELIENDAL 537

  Fly   736 RECNLTKVGDPLDE--KGYGIAMV-KNWPYRDKFNKALLELQEQGVLARLKNKWW---------- 787
            :...|.     :|:  ..:.:|.| :.||:.:.:|..:|.....|.     :|:|          
  Fly   538 KRLKLM-----VDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGF-----DKFWEWKIAAEYMN 592

  Fly   788 ----NEVGAGVCSAKSD-DDGPSELGVDNLSGIYVVLVIGSIISII 828
                |.:   |.|.|:: |.||.:||:||..|:.::...|.|.|::
  Fly   593 AHRQNRI---VASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLL 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 20/89 (22%)
ANF_receptor 46..380 CDD:279440 15/65 (23%)
PBP2_iGluR_Kainate 417..788 CDD:270432 76/409 (19%)
Lig_chan 549..819 CDD:278489 62/306 (20%)
Ir76aNP_001097647.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462844
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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