DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and Ir68b

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster


Alignment Length:552 Identity:106/552 - (19%)
Similarity:167/552 - (30%) Gaps:173/552 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   358 ITGRIYFEGNVRKGFTFDVIELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIV 422
            |||        |:..|||.......||..:    :..|.|.   |.|....|:       :.:.:
  Fly   151 ITG--------RENGTFDFDPFAWGGLQVI----QRLDGEV---PYARKVKDL-------RGYPL 193

  Fly   423 LISVATKPYASLVESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFRDGGNDYGSFNKTTNSTSG 487
            ..|:.|.|..::..|.....|.....|....::.|:.: ....:.|.:....||......|.| |
  Fly   194 RFSMFTDPLMAMPRSPVETAGYQAVDGVAARVVGEMLN-ASVTYVFPEDNESYGRCLPNGNYT-G 256

  Fly   488 MLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILY---------VKPQKA-PPALFSF 542
            ::.:||.|....|       .....|:|...|    .:.:||         |.|..| .|....|
  Fly   257 VVSDIVGGHTHFA-------PNSRFVLDCIWP----AVEVLYPYTRRNLHLVVPASAIQPEYLIF 310

  Fly   543 MDPFSSEVWLYLGIAYLGVSLCFFIIGRLS-----------PIEWDNPYPCIE--------EPEE 588
            :..|...||..|.:..|.|.|.|:::.||.           ...|   |..:|        ||..
  Fly   311 VRVFRRTVWYLLLVTLLVVVLVFWVMQRLQRRIPRRGVIQFQATW---YEILEMFGKTHVGEPAG 372

  Fly   589 LENQFTINNSLWFTTGALLQQGSEIAPKALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTS 653
            ..:.|:                        |.||....|..|:.::.:.|.|.|.:.....:...
  Fly   373 RLSSFS------------------------SMRTFLMGWILFSYVLSTIYFAKLESGFVRPSYEE 413

  Fly   654 PINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPIYIKMNEYLNAHPEMLMENNQQ----GVDK 714
            .::.|.||...  ||...|..|             :|..:...|..|...|:||..:    |:  
  Fly   414 QVDRVDDLVHL--DVHIYAVTT-------------MYDAVRSALTEHQYGLLENRSRQLPLGI-- 461

  Fly   715 VKSGTKY------------AFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIA------------ 755
               .|.|            ||:|.    :|: .|:..........:...|.||            
  Fly   462 ---ATSYYQPVVRRRDRRAAFIMR----DFH-ARDFLAITYDSQAERPAYHIAREYLRSMICTYI 518

  Fly   756 MVKNWPYRDKFNKALLELQEQGVLARLKNKWWNE------VGAG---------VCSAKSDDDGPS 805
            :.:..|:..:.........|.|..     :.|.:      |||.         :......|.|.:
  Fly   519 LPRGSPFLHRLESLYSGFLEHGFF-----EHWRQMDLITRVGASPDAEEFLEDLGDQTDTDSGSN 578

  Fly   806 ELGVDN---------LSGIYVVLVIGSIISII 828
            ||.:.|         |.|.:.:..:|..||.:
  Fly   579 ELAIRNKKVVLTLDILQGAFYLWSVGIGISCL 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 10/38 (26%)
ANF_receptor 46..380 CDD:279440 7/21 (33%)
PBP2_iGluR_Kainate 417..788 CDD:270432 78/427 (18%)
Lig_chan 549..819 CDD:278489 61/340 (18%)
Ir68bNP_648548.1 Lig_chan 333..607 CDD:278489 56/330 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462883
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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