DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and Ir40a

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster


Alignment Length:762 Identity:151/762 - (19%)
Similarity:266/762 - (34%) Gaps:217/762 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 SRIVVVG---STTGVA--ELLRQAQQVGI---------------MNEDYTYIIGNL-NLH----- 249
            :|:..:|   |.|.:|  :::|..||..:               ..|...|:...| .||     
  Fly    20 TRLTFIGNDESDTAIALTQIVRGLQQSSLAILALPSLALSDGVCQKERNVYLDDFLQRLHRSNYK 84

  Fly   250 --TFDLEE--YKYSEANITGI-RMFSPDQEEVRDLMEKLH-QELGESEPVNSGSTFITMEMALTY 308
              .|...|  :::.|.|:.|. ...|...:|...|:..|| :.||     :..|.||....|...
  Fly    85 SVVFSQTELFFQHIEENLQGANECISLILDEPNQLLNSLHDRHLG-----HRLSLFIFYWGARWP 144

  Fly   309 DAVRVIAETTKHLPYQPQMLNCSERHDNVQPDGSTFRNYMRSLEI---KEKTITGRIYFEGNVRK 370
            .:.|||                            .||..:|.:.:   ::|..  |||:  |..:
  Fly   145 PSSRVI----------------------------RFREPLRVVVVTRPRKKAF--RIYY--NQAR 177

  Fly   371 GFTFDVIELQTSGLVKVGTWEEGKDFEFQRPPQA-------VNFNDIDDGSLVNKTFIVLISVAT 428
            ..:...::|.        .|.:|.:...||.|..       .||.        .:||.|.: ..:
  Fly   178 PCSDSQLQLV--------NWYDGDNLGLQRIPLLPTALSVYANFK--------GRTFRVPV-FHS 225

  Fly   429 KPYASLVESIDTLIGNNQFQ--------------------GYGVDLIKELADKLGFNFTFRDG-G 472
            .|:..:...      ||.|:                    |....|:..|:..:.|.|.:.:. |
  Fly   226 PPWFWVTYC------NNSFEEDEEFNSLDSIEKRKVRVTGGRDHRLLMLLSKHMNFRFKYIEAPG 284

  Fly   473 NDYGSFNK-----TTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYV-- 530
            ...||...     :.:|.:|.:..:..|:||..:.|:.::.||.:.|:||  |..|..:..:.  
  Fly   285 RTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADSGAFATH 347

  Fly   531 KPQKAPPALFSFMDPFSSEVW-------LYLGIAYLGVSLCFFIIGRLSPIEWDNPYPCIEEPEE 588
            .|::...|| :.|.||..::|       ::.|..:.|:....:|..|    .|.|  ..:|...|
  Fly   348 APRRLNEAL-AIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYIWRR----RWAN--SDVEHLGE 405

  Fly   589 LENQFT---------------------------INNSLWFTTGALLQQGSEIAPKALSTRTISAI 626
            |....|                           ....:|||....|:|...........:.::.:
  Fly   406 LYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIV 470

  Fly   627 WWF-FTLIMVSSYTANLAAFLTIENPTSPINSVKDL--ADNKDDVQYGAKRTGSTRNFFSTSEE- 687
            :|. .|.::...|:|.|.:.........|||:::.|  |...|..:...::..|:........| 
  Fly   471 YWIAATYVLADVYSAQLTSQFARPAREPPINTLQRLQAAMIHDGYRLYVEKESSSLEMLENGTEL 535

  Fly   688 --PIYIKMNEYLNAHPEMLMENNQQG--VDKVKSGTKY--------AFLMESTSIEFNTVR-ECN 739
              .:|..|.:.        :.|:.||  :|.|::|.|.        |.|....::.||..: ..|
  Fly   536 FRQLYALMRQQ--------VINDPQGFFIDSVEAGIKLIAEGGEDKAVLGGRETLFFNVQQYGSN 592

  Fly   740 LTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLK----NKWWNEVGA-----GVC 795
            ..::...|..:...:|:....|:....|..|::|.|.|:|.::.    .|.:.||.|     |..
  Fly   593 NFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSV 657

  Fly   796 SAKS----------DDDGPSELGVDNLSGIYVVLVIGSIISIIISIL 832
            .||:          |....|.|.:..|.|.::.|.:||:.:.:|.:|
  Fly   658 QAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVILLL 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 43/220 (20%)
ANF_receptor 46..380 CDD:279440 40/203 (20%)
PBP2_iGluR_Kainate 417..788 CDD:270432 87/453 (19%)
Lig_chan 549..819 CDD:278489 64/339 (19%)
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 27/130 (21%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 22/96 (23%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 31/148 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462831
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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