DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and GluRIIC

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:923 Identity:258/923 - (27%)
Similarity:429/923 - (46%) Gaps:112/923 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SSGQSIRLGLITDDATDRIRQTFEHAISVVNNELGVPLVGETEQV-----------AYGNSVQAF 82
            |.||.|.:|....|....:.:.|...::.:|..       |:||.           ....||...
  Fly    20 SRGQQINIGAFFYDDELELEKEFMTVVNAINGP-------ESEQTMRFYPLIKRLKPEDGSVTMQ 77

  Fly    83 AQLCRLMQSGVGAVFGPAARHTASHLLNACDSKDIPFIYPHLSWGSNPDG-----------FNLH 136
            ...|.|:.:||.|:|||:::..:..:...|:|..|    ||:.:..:.:|           .||:
  Fly    78 EHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGI----PHIEFDISDEGIQAEKPNHQMTLNLY 138

  Fly   137 PSPEDIANALYDIVNQFEWSRFIFCYES--AEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYK 199
            |:...::.|..|||..|.|.:|...|::  |.....|..|:....:...|::|.::  :.:.:::
  Fly   139 PAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVRVRKF--HKDDDFR 201

  Fly   200 SVLRRIRKSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYI-IGNLNLHTFDLEEYKYSE--- 260
            .:.:.||  .:.|:|:......:.|||..:.:.|:..: |.:| :.||..:|..|||.....   
  Fly   202 VMWKSIR--GERRVVLDCEPNMLVELLNSSTEFGLTGQ-YNHIFLTNLETYTDHLEELAADNETF 263

  Fly   261 -ANITGIRMF-SPDQEEVRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRVIAETTKHLPY 323
             .|||..|:. :||                 ..|.:....::|....:.|::           ..
  Fly   264 AVNITAARLLVNPD-----------------PPPYSLPYGYVTQRDNIVYES-----------SD 300

  Fly   324 QPQMLNCSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFEGNVRKGFTFDVIELQTSGLVKVG 388
            .|:.|.....||.:|....::||  .|....::.:..||..:.....|.|: .:....:.|:|..
  Fly   301 PPRTLIHDLIHDALQLFAQSWRN--ASFFYPDRMVVPRITCDFAASGGRTW-AMGRYLARLMKGT 362

  Fly   389 TWEEGKDF-----EFQRPPQAVNFN-DIDD-------------GSLVNKTFIV------LISVAT 428
            :.....:|     :|....|.:.|| ::.|             |.:......|      :..|||
  Fly   363 SGVNNTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVAT 427

  Fly   429 K---PYASLVESID--TLIGNNQFQGYGVDLIKELADKLGFNFTFRD-GGNDYGSFNKTTNSTSG 487
            :   ||.|..|:..  .|.||..:|||.||||..:|..:||.:.|.. ....||..:|.|...:|
  Fly   428 RIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNG 492

  Fly   488 MLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWL 552
            ::.||:...|.:.|.|||||..|:..:||::|||.||::||..|.......|.:::.||..|||:
  Fly   493 IIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWI 557

  Fly   553 YLGIAYLGVSLCFFIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAPKA 617
            ::.|:...::....|:.|:|.::|:||:||..:||.||||:.|:|:.|.|..:::..|.:|.|::
  Fly   558 WILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRS 622

  Fly   618 LSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFF 682
            ...|...|.||.|.:|:.:|||||||||||.......|.::|||:..| .|::|....|||.|..
  Fly   623 PQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQK-KVKFGTIYGGSTYNLL 686

  Fly   683 STSEEPIY-IKMNEYLNAHPEMLMENNQQGVDKV-KSGTKYAFLMESTSIEFNTVRECNLTKVGD 745
            :.|.|.:| :..|...|..|....::|.:|||:| |:...|.||||:|::|::..:.|:|..||:
  Fly   687 ADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGE 751

  Fly   746 PLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVD 810
            ...||.|.||:.....||...:.|:|:|.|:|.|..||.|||....|. |..:.|.|...::..:
  Fly   752 KFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNAS-CFEEPDPDATPDMTFE 815

  Fly   811 NLSGIYVVLVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERPLKSAQS 875
            .|.||:..|..|.:|:.:|.|..:..:|.:.|....:.|.||..:|.|.|:....|.:|:.:...
  Fly   816 ELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTP 880

  Fly   876 IYSRSRNSSQSIE 888
            |.|......:|::
  Fly   881 ISSVRTTPRRSLD 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 79/396 (20%)
ANF_receptor 46..380 CDD:279440 74/363 (20%)
PBP2_iGluR_Kainate 417..788 CDD:270432 143/384 (37%)
Lig_chan 549..819 CDD:278489 101/271 (37%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 84/424 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/97 (18%)
PBP2_iGluR_Kainate 423..794 CDD:270432 142/371 (38%)
Lig_chan 554..828 CDD:278489 102/275 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462604
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17567at33392
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
77.000

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