DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and Ir7c

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster


Alignment Length:439 Identity:86/439 - (19%)
Similarity:172/439 - (39%) Gaps:78/439 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   421 IVLISVATKPYASLVESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFR---DGGNDYGSFNKTT 482
            :|:.:...:||. ::|......|.....|....:.:.||:::  |||.:   ....:.|......
  Fly   216 MVVATFEHRPYV-IIEDDPKTPGGRSIHGIEGLIFRSLAERM--NFTIKLVEQKDKNRGEILPDG 277

  Fly   483 NSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFS 547
            |.| |:||.:|:|..:|.......:..|.:::..|..:.:..|.::........| :.....||.
  Fly   278 NFT-GILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MGRLTRPFR 340

  Fly   548 SEVW--LYLGIAYLGVSLCF-----------FIIGRLSPIEWDNPYPCIEEPEELENQFTINNSL 599
            ..:|  :.:.:.:..|.:|.           .::||.:.:    |:                ..:
  Fly   341 YIIWSCILVSLIFGFVLICLLKITALPGLRNLVLGRRNRL----PF----------------MGM 385

  Fly   600 WFTTGALLQQGSEIAPKALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKD-LAD 663
            |   .:||...:...|:....|.|..:|...|||:.::||..|...|......|||.|:.: ||.
  Fly   386 W---ASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAK 447

  Fly   664 NKDDVQYGAKRT-----GSTRNFFS--TSEEPIYIKMNEYLNAHPEMLMENNQQGVDKVKSGTKY 721
            :.:.....|.||     ..|.||.:  :.||.:|            .|.:.:..|:.        
  Fly   448 DYEFRILPALRTIFKDSMPTTNFHAVLSLEESLY------------RLRDEDDPGIT-------- 492

  Fly   722 AFLMESTSIEF---NTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLK 783
            ..|::.|..:|   :...:.:||.:.|||........|..:..::.:.::.::.:...|::||.:
  Fly   493 VALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYR 557

  Fly   784 NKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISIL 832
            ..:.:.:..   .:|..:..|..|.:..||||:|......::::|:.||
  Fly   558 KMYMDRIKR---VSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFIL 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377
ANF_receptor 46..380 CDD:279440
PBP2_iGluR_Kainate 417..788 CDD:270432 75/393 (19%)
Lig_chan 549..819 CDD:278489 57/293 (19%)
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 16/65 (25%)
Lig_chan 343..593 CDD:278489 57/295 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462841
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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