DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and glr-4

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001254126.1 Gene:glr-4 / 174258 WormBaseID:WBGene00001615 Length:951 Species:Caenorhabditis elegans


Alignment Length:935 Identity:275/935 - (29%)
Similarity:471/935 - (50%) Gaps:142/935 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 FYGGNAYEASSGQSIRLGLITDDATDRIRQTFEH---AISVVNNELGVPLVGETE-------QVA 74
            ||..|   :::.....:|.|    .:|....:||   ||...|.|.|    ..|:       .:.
 Worm    18 FYIAN---SAADDRFHIGTI----ANRGSFAYEHLRYAIDRWNTEHG----AHTQIKFSIVSPIR 71

  Fly    75 YGNSVQAFAQLCRLMQSGVGAVF--GPAARHTASHLLNACDSKDIPFIYPHLSWGSNPDGFN--- 134
            |.|:.:  .::|.:||.|:.||.  ...:...:..:.:.|...:||.:  .|...|..|..:   
 Worm    72 YDNNYE--ERMCEIMQQGIVAVVLSNEESEQDSQLIKSMCHYFNIPCL--SLQSTSLRDSVSDFV 132

  Fly   135 --LHPSPEDIANALYDIVNQFEWSRFIFCYESAEYLKILDHLMTRY------GIKGPVIKVMRYD 191
              |.||....|.|..:.::...|:.|:..|:....|:.|..|| :|      |.:...||:.|..
 Worm   133 TLLGPSRGAGARATSEFLDSMRWTGFLLAYQHGSDLEDLSPLM-QYKQIVDTGGRRIHIKIRRLP 196

  Fly   192 LNLNGNYKSVLR--RIRKSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGNLNLHTFDLE 254
            .|.: :|:..|:  :.|..:.:.|:...:.|.:..||:||:.:.:....::|:..|.:|..  ||
 Worm   197 NNTD-DYEPFLKYVKTRLKQTNIIIHSNNITVLYNLLQQARGLNMAEPPFSYVFTNTDLSL--LE 258

  Fly   255 EYKYS------EANITGIRMFSPDQEEVRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRV 313
            ::..:      ..||||:                   :|.:::|:      :..::|||.:||.|
 Worm   259 DFLNNMYGASFHCNITGL-------------------QLVKNDPM------MKTQLALTSEAVYV 298

  Fly   314 IA------ETTKHLPYQPQMLNCSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFEGN-VRKG 371
            :.      ....|.|.|..:: | :.|| :..||......:|.|:::.: :||.:.|:.| .|..
 Worm   299 VGMSIYRMRELGHAPRQSSIM-C-DSHD-IWSDGRIMNEGIRKLKLRNQ-LTGDVQFKSNGERDD 359

  Fly   372 FTFDVIELQTSGLVKVGTWEEGKDFEF-QRPPQAVNFNDID-DGSLVNKTFIVLISVATKPYASL 434
            ..:..:....|..||:|.|.|.:.:.| .|......| ||| |...:....:.::....:|:.  
 Worm   360 IMYHGVGRINSQFVKLGNWSEKRGWNFDSRYANRWEF-DIDPDSEDLEGLHLRVVVYLEEPFV-- 421

  Fly   435 VESIDTLIGNNQFQGYGVDLIKELADKLGFNFTF---RDGGNDYGSFNKTTNSTSGMLKEIVEGR 496
               |.|  |.||::|:.:||:.|:...|.||:|.   :||  .|| ....:...:|::..:....
 Worm   422 ---IKT--GENQYEGFCIDLLNEMTQVLKFNYTIIEVQDG--TYG-IEDESGRWNGIIGALQRHE 478

  Fly   497 ADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPP--ALFSFMDPFSSEVWLYLGIAYL 559
            |||:::.:|||..|.||:||::|||:|||:||..:..:...  :|::|::|.|..||:.|.|:|.
 Worm   479 ADLSLSAVTITYSRAEVVDFTLPFMHLGISILLARTSEETDKGSLWTFLEPLSLTVWISLLISYC 543

  Fly   560 GVSLCFFIIGRLSPIEWDNPYPCIEEPEELE--------NQFTINNSLWFTTGALLQQGSEIAPK 616
            .||....|:.:.||.||.|    :|..:|.:        ||||:.||.|||.|:|:||||::.|:
 Worm   544 IVSYSMHILAKFSPYEWYN----LERIDERDFENIKNQKNQFTVLNSFWFTMGSLMQQGSDVIPR 604

  Fly   617 ALSTRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNF 681
            |.:||.|:.:||.||.|::|||||.||||||:|..::||.|.:||| |:..::||..::|||.:|
 Worm   605 AAATRLIAVVWWMFTQIIISSYTAQLAAFLTVERMSTPIESTQDLA-NQQKIRYGVLKSGSTMDF 668

  Fly   682 FSTSEEPIYIKMNEYL-NAHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGD 745
            |..|:.|:|.:|...: ::.|.:.:.::::|:.:|||| .||::|||:.:|:...|:|.|..:|.
 Worm   669 FRESKIPMYERMWSVMESSSPGVFVNSSREGIARVKSG-GYAYMMESSMLEYYLERDCELQSIGG 732

  Fly   746 PLDEKGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVD 810
            .||.||||||:.|..|.||..::.:|:|||:.:|..||||||.:...|    .|....|||...:
 Worm   733 LLDSKGYGIALPKGSPLRDILSRTVLQLQERTILEALKNKWWRDRREG----PSCGPPPSEKATN 793

  Fly   811 ----NLSGIYVVLVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERPLK 871
                |:.||:.||:.|.|::.:::  |..|.:..:.:.:.:        :..||.:|.:..|   
 Worm   794 SKPQNIFGIFYVLLTGLIVAFLLA--CGEYCIESRHEAFRL--------KLTIVGKFMDWYR--- 845

  Fly   872 SAQSIYSRSRNSSQSIESLKTDSEE 896
             ..|..|:.|:..:::: |.|..:|
 Worm   846 -GNSNDSKQRSKLRNMQ-LDTAGQE 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 90/399 (23%)
ANF_receptor 46..380 CDD:279440 82/371 (22%)
PBP2_iGluR_Kainate 417..788 CDD:270432 150/384 (39%)
Lig_chan 549..819 CDD:278489 117/282 (41%)
glr-4NP_001254126.1 PBP1_iGluR_Kainate 30..385 CDD:107377 90/399 (23%)
ANF_receptor 45..365 CDD:279440 79/360 (22%)
Periplasmic_Binding_Protein_Type_2 410..775 CDD:304360 150/380 (39%)
Lig_chan 533..810 CDD:278489 119/286 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

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