DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and Grin3b

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_579842.2 Gene:Grin3b / 170796 RGDID:621705 Length:1002 Species:Rattus norvegicus


Alignment Length:687 Identity:149/687 - (21%)
Similarity:289/687 - (42%) Gaps:128/687 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 LGESEPVNSGSTFITMEMALTYDAVRVIAETTKHL----PYQ---PQMLNCSE-RHDNVQPDGST 343
            |||:|.       .::| |:.:|.|.::|:....:    |.:   |.::||.: :....:..|.|
  Rat   281 LGETEQ-------HSLE-AVVHDMVELVAQALSSMALVHPERALLPAVVNCDDLKTGGSEATGRT 337

  Fly   344 FRNYMRSLEIKEKTITGRIYFEGN--VRKGFTFDVIELQTSGL-----VKVGTWEEGKDFEFQRP 401
            ...::.:...:.:  ||.::..|:  |.....|.|..|:...|     ..||:|::|: .:||  
  Rat   338 LARFLGNTSFQGR--TGAVWVTGSSQVHVSRHFKVWSLRRDPLGAPAWATVGSWQDGQ-LDFQ-- 397

  Fly   402 PQAVNFNDIDDGSLVNKTFIVLISVATKPYASLVES----------------------IDTLIG- 443
            |.|.............:..:.::::...|:....||                      :|.|.. 
  Rat   398 PGAAALRVPSPSGTQARPKLRVVTLVEHPFVFTRESDEDGQCPAGQLCLDPGTNDSARLDALFAA 462

  Fly   444 --NNQF--------QGYGVDLIKELADKLGFNF-TFRDGGNDYGSFNKTTNSTSGMLKEIVEGRA 497
              |...        .||.:||::.||:.|.|:| .:..|...||:..  ....:|::.:::.|||
  Rat   463 LVNGSVPRTLRRCCYGYCIDLLERLAEDLAFDFELYIVGDGKYGALR--DGRWTGLVGDLLAGRA 525

  Fly   498 DLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGI-AYLGV 561
            .:|:|..:|.|.|.:|:||:.||.:..:.|: |:.:.....:.:||.|....:|  :|: |.|.:
  Rat   526 HMAVTSFSINSARSQVVDFTSPFFSTSLGIM-VRTRDTASPIGAFMWPLHWSMW--VGVFAALHL 587

  Fly   562 SLCFFIIGRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGALL-QQGSEIAPKALSTRTISA 625
            :..|     |:..||.:||............|:.:::|......|. :..|...||..:.|.:..
  Rat   588 TALF-----LTLYEWRSPYGLTPRGRNRGTVFSYSSALNLCYAILFGRTVSSKTPKCPTGRFLMN 647

  Fly   626 IWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKD--LADNKDDVQYGAKRTGSTRNFFSTSEEP 688
            :|..|.|:::|||||||||.:..:.....::.:.|  |.......::|.....|...:...|   
  Rat   648 LWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKAS--- 709

  Fly   689 IYIKMNEYLNAHPEMLMENNQQGVDKVKSGTK--YAFLMESTSIEFNTV--RECNLTKVGDPLDE 749
             :.:|:.::..|.   ......||..:.|...  .||:|:.:.:::...  .:|.|..||.|...
  Rat   710 -FPEMHAHMRRHS---APTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAI 770

  Fly   750 KGYGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAG--VCSAKSDDDGPSELGVDNL 812
            :||||.:.:|.|.....::.:...:..|.:..|.:||:..|..|  |.:...    ..::||.:.
  Rat   771 EGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMVPCGKRVFAVTE----TLQMGVYHF 831

  Fly   813 SGIYVVLVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEE--FRIVI----RFSENERPLK 871
            ||::|:|.:|...:::.|                      |.|.  :|:|:    |.::.:..|.
  Rat   832 SGLFVLLCLGLGSALLTS----------------------LGEHVFYRLVLPRIRRGNKLQYWLH 874

  Fly   872 SAQSIYSRSRNS------SQSIESLKTDSEENMPVED 902
            ::|.|: |:.|:      .:..|..::..::.:|..|
  Rat   875 TSQKIH-RALNTGPPEGQQERAEQERSGPKDELPATD 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 27/124 (22%)
ANF_receptor 46..380 CDD:279440 21/102 (21%)
PBP2_iGluR_Kainate 417..788 CDD:270432 94/412 (23%)
Lig_chan 549..819 CDD:278489 65/279 (23%)
Grin3bNP_579842.2 PBP1_iGluR_NMDA_NR3 21..405 CDD:107372 31/136 (23%)
PBP2_iGluR_NMDA_Nr3 414..808 CDD:270438 93/410 (23%)
Lig_chan 576..842 CDD:278489 66/283 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 882..910 3/27 (11%)
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 951..984
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349883
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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