DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and gria3a

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:879 Identity:291/879 - (33%)
Similarity:452/879 - (51%) Gaps:93/879 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SLIILSLSRVQAQFYGGNAYEASSGQSIRLGLITDDATDRIRQTFEHAISVVNNELGVP-----L 66
            |:::|....:|.|        |.....|.:|.:...:|.:....|..|:.:.|....:.     |
Zfish     8 SVLLLPWLVLQTQ--------AGFPNQINIGGLFMRSTVQEHSAFRFAVQLYNTNQNITEKPFHL 64

  Fly    67 VGETEQVAYGNSVQAFAQLCRLMQSGVGAVFGPAARHTASHLLNACDSKDIPFIYPHLSWGSNPD 131
            ....:.:...||.......|.....||.|:||...|.:.:.|.:.|.:....||.|  |:.::.|
Zfish    65 NYNVDNLESSNSFSVTHAFCSQFSRGVYAIFGFYDRRSMNTLTSFCGALHTSFITP--SFPTDTD 127

  Fly   132 -GFNLHPSPEDIANALYDIVNQFEWSRFIFCYESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLN 195
             .|.|...| .:..||..::..::|.:|::.|::.....||..:|     :..|:...:......
Zfish   128 VQFVLQMRP-SLRGALLSLLAHYKWEKFVYLYDTDRGFSILQAIM-----ESAVMNNWQVTARSV 186

  Fly   196 GN------YKSVLRRIRKSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGNLNLHTFDLE 254
            ||      |:.::..:.:.::.|.::......:..:|.|....|..:..|.||:.||......|:
Zfish   187 GNIVDPLEYRRIIEEMDRRQEKRFLIDCEVERINSILEQVVIAGKNSRGYHYILANLGFTNMSLD 251

  Fly   255 EYKYSEANITGIRMFSPDQEEVRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRVIAETTK 319
            :.....|||||.::.:||...|:..::: .:.|.|.|...|.|:.:....|||:||:.||||..:
Zfish   252 KVFSGGANITGFQIINPDSPIVQQFLQR-WERLDEREFPESRSSPLKYTSALTHDAILVIAEAFR 315

  Fly   320 HLPYQPQMLNCSERHD------NVQPDGSTFRNYMRSLE-IKEKTITGRIYFEG-NVRKGFTFDV 376
            :|  :.|.::.|.|..      |.....|...:..|:|: ::.:.:||.|.|:. ..|..:|.||
Zfish   316 YL--RRQRVDISRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDSFGRRSNYTVDV 378

  Fly   377 IELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLISVATKPYASLVESIDTL 441
            .|::..|..|:|.|.|.:.|.:....|..|    :..|:.|:| ||:.::...||.....:...|
Zfish   379 YEMKPGGARKIGYWNEFEKFVYIVEQQVTN----ESSSVENRT-IVVTTIMEAPYVMYKRNYMQL 438

  Fly   442 IGNNQFQGYGVDLIKELADKLGFNFTF---RDGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITD 503
            .||::::||.|||..|:|..:|..:..   .||  .||:.:..|.:.:||:.|:|.||||:|:..
Zfish   439 EGNDRYEGYCVDLASEIAKHVGIKYKLSIVADG--KYGARDPETKTWNGMVGELVYGRADIAVAP 501

  Fly   504 LTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFII 568
            ||||..||||||||.|||:|||:|:..||||:.|.:|||:||.:.|:|:.:..||:|||:..|::
Zfish   502 LTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLV 566

  Fly   569 GRLSPIEW---DNPYPCIEE------PEELENQFTINNSLWFTTGALLQQGSEIAPKALSTRTIS 624
            .|.||.||   ||     ||      |.:..|.|.|.|||||:.||.:|||.:|:|::||.|.:.
Zfish   567 SRFSPYEWHLDDN-----EETKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVG 626

  Fly   625 AIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPI 689
            .:|||||||::||||||||||||:|...|||.|.:||| .:.::.||...:|||:.||..|:..:
Zfish   627 GVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLA-KQTEIAYGTLDSGSTKEFFRRSKIAV 690

  Fly   690 YIKMNEYL-NAHPEMLMENNQQGVDKV-KSGTKYAFLMESTSIEFNTVRE-CNLTKVGDPLDEKG 751
            |.||..|: :|.|.:.::....||.:| ||..|:|||:|||..|:...|: |:..|||..||.||
Zfish   691 YEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKG 755

  Fly   752 YGIAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIY 816
            ||:|..|....|...|.|:|:|.|||:|.:||||||.:  .|.|..|..                
Zfish   756 YGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYD--KGECGTKDS---------------- 802

  Fly   817 VVLVIGSIISII--ISILCWCYFVYKKAKNYEVP 848
                 ||.:|::  :::|.....:|.|..| |.|
Zfish   803 -----GSKVSLLTHLTVLPTNISIYHKHHN-EFP 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 91/381 (24%)
ANF_receptor 46..380 CDD:279440 84/353 (24%)
PBP2_iGluR_Kainate 417..788 CDD:270432 177/385 (46%)
Lig_chan 549..819 CDD:278489 121/281 (43%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 91/381 (24%)
ANF_receptor 39..382 CDD:279440 84/353 (24%)
PBP2_iGluR_AMPA 415..797 CDD:270433 179/392 (46%)
Lig_chan 547..810 CDD:278489 124/291 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591344
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.750

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