DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and Grik5

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_030098003.1 Gene:Grik5 / 14809 MGIID:95818 Length:1003 Species:Mus musculus


Alignment Length:926 Identity:303/926 - (32%)
Similarity:477/926 - (51%) Gaps:105/926 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SIRLGLITDDAT-----DRIRQTFEHAISVVNNELGVPLVGETE----QVAYGNSVQAFAQLCRL 88
            |:|:..|.||.|     :|:....  |...:|..:.||.....|    ::...:..:....:|::
Mouse    23 SLRMAAILDDQTVCGRGERLALAL--AREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQI 85

  Fly    89 MQSGVGAVFG----PAARHTASHLLNACDSKDIPFI---------YPHLSWGSNPDGFNLHPSPE 140
            :..||.:|.|    ||:..|.||:   |..|:||.|         ..:|.:.|    .:|:||.|
Mouse    86 LPKGVVSVLGPSSSPASASTVSHI---CGEKEIPHIKVGPEETPRLQYLRFAS----VSLYPSNE 143

  Fly   141 DIANALYDIVNQFEW-SRFIFCYESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYKSVLRR 204
            |::.|:..|:..|.: |..:.| ..||.|..|:.|:..:.|....:.|...|.:.:..  .:|:.
Mouse   144 DVSLAVSRILKSFNYPSASLIC-AKAECLLRLEELVRGFLISKETLSVRMLDDSRDPT--PLLKE 205

  Fly   205 IRKSEDSRIVVVGSTTGVAELLR-----------------------QAQQVGIMNEDYTYIIGNL 246
            ||..:.|.|::..:.:....:||                       ||.::|:.:..|.||:..:
Mouse   206 IRDDKVSTIIIDANASISHLVLRLSLNLSSPLGFPRSLPLGLSCVLQASELGMTSAFYKYILTTM 270

  Fly   247 NLHTFDLEEYKYSEANITGIRMFSPDQEEVRDLMEKLHQELGESEPVNSGSTF--ITMEMALTYD 309
            :.....|:......:||.|..||:.......:.:..|:....|:   ...||:  ..:..||.:|
Mouse   271 DFPILHLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWREN---CEASTYPGPALSAALMFD 332

  Fly   310 AVRVIAETTKHLPYQPQM----LNCSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFEG-NVR 369
            ||.|:....:.|....::    |.|:..  |:.|.|::..||:|.:|.  ..:|||:.|.. ..|
Mouse   333 AVHVVVSAVRELNRSQEIGVKPLACTSA--NIWPHGTSLMNYLRMVEY--DGLTGRVEFNSKGQR 393

  Fly   370 KGFTFDVIELQTSGLVKVGTWEEGKDFEFQRPPQAVNFNDIDDGSLVNKTFIVLISVATKPYASL 434
            ..:|..::|....|..::|.|...:..........:|.:.    :|.||| :|:.::...||...
Mouse   394 TNYTLRILEKSRQGHREIGVWYSNRTLAMNATTLDINLSQ----TLANKT-LVVTTILENPYVMR 453

  Fly   435 VESIDTLIGNNQFQGYGVDLIKELADKLGFNFTFR---DGGNDYGSFNKTTNSTSGMLKEIV-EG 495
            ..:...|.||.:|:|:.||:::|||:.|.|.:..|   ||  .||: .:...|.:||:.|:: ..
Mouse   454 RPNFQALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDG--LYGA-PEPNGSWTGMVGELINRQ 515

  Fly   496 RADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLG 560
            :||||:...|||:|||:|||||.|||.|||:|||.......|..|||:||||..|||::.:|||.
Mouse   516 KADLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLA 580

  Fly   561 VSLCFFIIGRLSPIEWDNPYPCIE-EPEELENQFTINNSLWFTTGALLQQGSEIAPKALSTRTIS 624
            ||...|:..||||.||.||:||:. .|..||||:|:.|||||..|..:||||||.|:|||||.:|
Mouse   581 VSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVS 645

  Fly   625 AIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPI 689
            .:||.||||::||||||||||||::....|:.|..|||| :.:::||....|||..||..|....
Mouse   646 GVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLAD-QTNIEYGTIHAGSTMTFFQNSRYQT 709

  Fly   690 YIKMNEYLNA-HPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYG 753
            |.:|..|:.: .|.:.:::.::|:.:|.: ::||||:|||..|::....||||::|..||.||||
Mouse   710 YQRMWNYMQSKQPSVFVKSTEEGIARVLN-SRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYG 773

  Fly   754 IAMVKNWPYRDKFNKALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVV 818
            |.|....|:||:...|:|:|||...|..||.|||.   .|.| .|.:|.....||::|:.||:||
Mouse   774 IGMPLGSPFRDEITLAILQLQENNRLEILKRKWWE---GGRC-PKEEDHRAKGLGMENIGGIFVV 834

  Fly   819 LVIGSIISIIISILCWCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERPLKSAQSIYSRSR-- 881
            |:.|.||::.::::.:.:...:.|::.||..|..:.:|.|..:...:..|         ||.|  
Mouse   835 LICGLIIAVFVAVMEFIWSTRRSAESEEVSVCQEMLQELRHAVSCRKTSR---------SRRRRR 890

  Fly   882 --NSSQSIESLKTDSE 895
              ..|:::.||:...|
Mouse   891 PGGPSRALLSLRAVRE 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 95/414 (23%)
ANF_receptor 46..380 CDD:279440 87/381 (23%)
PBP2_iGluR_Kainate 417..788 CDD:270432 175/376 (47%)
Lig_chan 549..819 CDD:278489 127/271 (47%)
Grik5XP_030098003.1 PBP1_iGluR_Kainate_KA1_2 23..424 CDD:380616 96/419 (23%)
Periplasmic_Binding_Protein_Type_2 437..808 CDD:419667 175/376 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846411
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.660

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