DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and Grik3

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:910 Identity:331/910 - (36%)
Similarity:516/910 - (56%) Gaps:96/910 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IRLGLI---TDDATDRIRQTFEHAI----SVVN-NELGVP---LVGETEQVAYGNSVQAFAQLCR 87
            ||:|.|   .|....::....|||.    :::| |...:|   |..:.:::.:.:|.:|..:.|.
Mouse    36 IRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACD 100

  Fly    88 LMQSGVGAVFGPAARHTASHLLNACDSKDIPFIYPHLSWGSNP----DGF--NLHPSPEDIANAL 146
            .:..||.|:|||:.....:.:.:.|::.::|.|  .|.|..:|    |.|  ||:|....:::|:
Mouse   101 QLALGVVAIFGPSQGSCTNAVQSICNALEVPHI--QLRWKHHPLDNKDTFYVNLYPDYASLSHAI 163

  Fly   147 YDIVNQFEWSRFIFCYESAEYLKILDHLM---TRYGIKGPVIKVMRYDLNLNGNYKSVLRRIRKS 208
            .|:|...:|......|:.:..|..|..|:   :||.|:   :|:.:..:: :.:.:.:|:.:::.
Mouse   164 LDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIR---LKIRQLPID-SDDSRPLLKEMKRG 224

  Fly   209 EDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGNLNLHTFDLEEYKYSEANITGIRMFSPDQ 273
            .:.||:...|.|..|::|:||..:|:|.|.|.:|...|:|:..|||.|:||..|:||.|:.:.|.
Mouse   225 REFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLTGFRILNVDN 289

  Fly   274 EEVRDLMEKLHQELGESEP-VNSG--STFITMEMALTYDAVRVIAETTKHLPYQ--PQM----LN 329
            ..|..::||...|..::.| ..||  ...:..:.||.||||.:::     :.||  |||    |.
Mouse   290 PHVSAIVEKWAMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVS-----VCYQRAPQMTVNSLQ 349

  Fly   330 CSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFE--GNVRKGFTFDVIELQTSGLVKVGTWEE 392
            | .|| .....|..|.|:::  |.:.:.:||||.|.  ..:|..|..|:|.|:..||.|||.|. 
Mouse   350 C-HRH-KAWRFGGRFMNFIK--EAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWS- 409

  Fly   393 GKDFEFQRPPQAVNFNDIDDG-------SLVNKTFIVLISVATKPYASLVESIDTLIGNNQFQGY 450
                    |...:|..::..|       ||.|::.|| .:|..:|:....:|..||.||::|:||
Mouse   410 --------PADGLNITEVAKGRGPNVTDSLTNRSLIV-TTVLEEPFVMFRKSDRTLYGNDRFEGY 465

  Fly   451 GVDLIKELADKLGFNFTFR---DG----GNDYGSFNKTTNSTSGMLKEIVEGRADLAITDLTITS 508
            .:||:||||..|||::..|   ||    .:|.|.:|       ||:||:::.:||||:..||||.
Mouse   466 CIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWN-------GMVKELIDHKADLAVAPLTITH 523

  Fly   509 EREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSP 573
            .||:.||||.|||.||::|||.||....|::|||::|.|.::|:|:.:||||||...|:|.|.||
Mouse   524 VREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFVIARFSP 588

  Fly   574 IEWDNPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAPKALSTRTISAIWWFFTLIMVSSY 638
            .||.:.:||....|.:||.||:.||.||..|:|:|||||:.|||||||.|..||||||||::|||
Mouse   589 YEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSY 653

  Fly   639 TANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPIYIKMNEYLNAHPEM 703
            |||||||||:|...|||:|..||| .:..::|||.:.|:|..||..|:...:.||..::::.|..
Mouse   654 TANLAAFLTVERMESPIDSADDLA-KQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSA 717

  Fly   704 LMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNK 768
            |::||::|:.:..: ..||.|||||:||:.|.|.||||::|..:|.|||||......|||||...
Mouse   718 LVKNNEEGIQRTLT-ADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITI 781

  Fly   769 ALLELQEQGVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISILC 833
            |:|:|||:..|..:|.|||.  |:| |..:.:.:. |.||:..:.||::||..|.::|:::::..
Mouse   782 AILQLQEEDKLHIMKEKWWR--GSG-CPEEENKEA-SALGIQKIGGIFIVLAAGLVLSVLVAVGE 842

  Fly   834 WCYFVYKKAKNYEVPFCDALAEEFRIVIRFSENERPLKSAQSIYSRSRNSSQSIESLKTDSEENM 898
            :.|.:.|.|:..:..||..:|:|    ||||         .:...|.::..|....:|||:..||
Mouse   843 FIYKLRKTAEREQRSFCSTVADE----IRFS---------LTCQRRLKHKPQPPMMVKTDAVINM 894

  Fly   899  898
            Mouse   895  894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 112/392 (29%)
ANF_receptor 46..380 CDD:279440 101/361 (28%)
PBP2_iGluR_Kainate 417..788 CDD:270432 182/377 (48%)
Lig_chan 549..819 CDD:278489 129/269 (48%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 115/404 (28%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 182/377 (48%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846396
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4198
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.600

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