DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIID and grik5

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_002936446.1 Gene:grik5 / 100497490 XenbaseID:XB-GENE-953974 Length:995 Species:Xenopus tropicalis


Alignment Length:872 Identity:296/872 - (33%)
Similarity:467/872 - (53%) Gaps:70/872 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SIRLGLITDDAT-----DRIRQTF--EHAISVVNNELGVPLVGETEQVAYGNSVQAFAQLCRLMQ 90
            |:|:..|.||.|     :|:....  ||..|.........:..|..::...:..:....:|:::.
 Frog    27 SLRVAAILDDQTVCGRGERLALALAREHINSHTQGSASGRVEVEIFELQKDSQYETTDTMCQILP 91

  Fly    91 SGVGAVFG----PAARHTASHLLNACDSKDIPFI---------YPHLSWGSNPDGFNLHPSPEDI 142
            .||.:|.|    ||:..|.||:   |..|:||.|         ..:|.:.|    .:|:||.|||
 Frog    92 KGVVSVLGPSTSPASASTVSHI---CGEKEIPHIKVGPEEAPKLQYLRFAS----VSLYPSNEDI 149

  Fly   143 ANALYDIVNQF-EWSRFIFCYESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLNGNYKSVLRRIR 206
            :.|:..|:..| ..|..:.| ..||.|..|:.|:.::.|....:.|..  |:.:.:...:|:.||
 Frog   150 SLAVSHILKSFHNPSTSLIC-AKAECLLRLEELVRQFLISKDTLSVRM--LDESNDPTPLLKEIR 211

  Fly   207 KSEDSRIVVVGSTTGVAELLRQAQQVGIMNEDYTYIIGNLNLHTFDLEEYKYSEANITGIRMFSP 271
            ..:.|.|::..:.|....:|::|.::|:.:..|.||:..::.....||.....::||.|..|::.
 Frog   212 DDKVSTIIIDANATVSHLILKKASELGMTSAHYKYILTTMDFPLLSLEGIVSDQSNILGFSMYNS 276

  Fly   272 DQEEVRDLMEKLHQELGESEPVNSGSTFI--TMEMALTYDAVRVIAETTKHLPYQPQM----LNC 330
            ......:.:..|:....|:..:   ||::  .:..||.:|||.|:....:.|....::    |:|
 Frog   277 SHPFYLEFLRSLNMSWRENCEL---STYLGPALSAALMFDAVHVVVSAVRELNRSQEIGVKQLSC 338

  Fly   331 SERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFEG-NVRKGFTFDVIELQTSGLVKVGTWEEGK 394
            |.  ..:...|::..||:|.:|.  ..:|||:.|.. ..|..:|..::|....|..::|.|...:
 Frog   339 ST--SQIWQHGTSLMNYLRMVEY--DGLTGRVEFNSKGQRTNYTLRILEKAGDGHREIGVWYSNR 399

  Fly   395 DFEFQRPPQAVNFNDID---DGSLVNKTFIVLISVATKPYASLVESIDTLIGNNQFQGYGVDLIK 456
            ..       |:|...:|   ..:|.||| :|:.::...||.....:..:|.||:|::|:..:::.
 Frog   400 TL-------AMNATSLDLSTSETLENKT-LVVTTILENPYMMRKSNYRSLSGNDQYEGFCAEMLM 456

  Fly   457 ELADKLGFNFTFR---DGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDFSI 518
            |||..|.||:..:   ||  .||: .:...|.:||:.|::..:||||:...|||:|||:|||||.
 Frog   457 ELAALLRFNYKIKLVEDG--LYGA-PEPNGSWTGMVGELINRKADLAVAAFTITAEREKVIDFSK 518

  Fly   519 PFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIEWDNPYPCI 583
            |||.|||:|||.......|..|||:||||..|||::.:|||.||...|:..||||.||.||:||:
 Frog   519 PFMTLGISILYRVQMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCL 583

  Fly   584 EEPEE-LENQFTINNSLWFTTGALLQQGSEIAPKALSTRTISAIWWFFTLIMVSSYTANLAAFLT 647
            .|... ||||:|:.|||||..|..:|||||:.|:|||||.:|.:||.||||::||||||||||||
 Frog   584 RERHHILENQYTLGNSLWFPVGGFMQQGSEVMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLT 648

  Fly   648 IENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPIYIKMNEYLNA-HPEMLMENNQQG 711
            ::....||.|..|||| :.:::||....|||..||..|....|.:|..|:|: .|.:.:::.::|
 Frog   649 VQRMEVPIESADDLAD-QTNIEYGTIHGGSTMTFFQNSRYQTYQRMWNYMNSKQPSVFVKSTEEG 712

  Fly   712 VDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKALLELQEQ 776
            :.:|.: ::||||:|||..|::....||||::|..||.|||||.|....||||:...|:|:|||.
 Frog   713 IARVLN-SRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPYRDEITLAILQLQEN 776

  Fly   777 GVLARLKNKWWNEVGAGVCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISILCWCYFVYKK 841
            ..|..||.|||.   .|.| .|.:|.....||::|:.||:|||:.|.||::.::|:.:.:...:.
 Frog   777 NRLEILKRKWWE---GGKC-PKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAIMEFVWSTRRS 837

  Fly   842 AKNYEVPFCDALAEEFRIVIRFSENER 868
            ..|.|:..|..:..|.|..:...:..|
 Frog   838 VDNEEISVCQEMLSELRSAVSCKKTSR 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 93/389 (24%)
ANF_receptor 46..380 CDD:279440 85/356 (24%)
PBP2_iGluR_Kainate 417..788 CDD:270432 175/375 (47%)
Lig_chan 549..819 CDD:278489 129/271 (48%)
grik5XP_002936446.1 PBP1_iGluR_Kainate_KA1_2 27..405 CDD:380616 95/401 (24%)
Periplasmic_Binding_Protein_Type_2 418..788 CDD:389745 175/375 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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