DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIID and grin3bb

DIOPT Version :9

Sequence 1:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:986 Identity:206/986 - (20%)
Similarity:400/986 - (40%) Gaps:190/986 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ASSGQSIRLG-LITDDATDRIRQTFEHAISVV----NN----ELGVPLVGETEQVAYGNSVQAFA 83
            |..|.::||| |:....:.|:|.....|:|.:    ||    .|.:.:|....|  .|:....|.
Zfish    41 ARIGHTVRLGALLPPRQSVRVRAALHRALSGLAESGNNFLPYNLSLDVVAREAQ--SGDPESLFR 103

  Fly    84 QLCR-LMQSGVGAVFG-PAARHTASHLLNACDSKDIPF--IYPHLSWGSNPDGFNLHPS----PE 140
            .:|: ::..||.||.. |..:.....:.......:|||  |..|.......:.|:|..:    |.
Zfish   104 CVCQDIVVQGVSAVLAFPQTQEEIVQMEFMSSFLEIPFISIIEHGEPLKTQNRFHLQMTTRIPPS 168

  Fly   141 DIANALYDIVNQFEW--SRFIFC--YESAEYLKILDHLMTRYGIKGPVIKVMRYDLNLN------ 195
            .:...|..::.:..|  |..:.|  :|.|..|.:| .|..|:| .||....:|..|||:      
Zfish   169 GLVELLLAVLQRSGWEESMAVLCHGWEDAGLLDLL-KLQGRFG-WGPSQWHLRAALNLSHSTARM 231

  Fly   196 ---GNYKSVLRRIRKSEDSRIVVVGSTTGVA-ELLRQAQQVGIMNEDYTYIIGN-LN---LHTFD 252
               .::.|....:..|..:.:::.|:....| .:||.|..:|:......:|:|: |:   ||:..
Zfish   232 ANISDFLSEHFNLDHSPPASVLLFGADPECASSVLRSAHDLGLTLPTVHWIMGHPLSPDALHSIG 296

  Fly   253 LE--EYKYSEANITGIRMFSPDQEEVRDLMEKLHQELGESEPVNSGSTFITMEMALTYDAVRVIA 315
            |.  ...|.|.:      ..|....:.|.::.:::.:       :.:|.:..::||..:.|....
Zfish   297 LPLGLLAYGEVD------HKPLDFYISDALQLINRAV-------TAATVVRPDLALIQNMVNCFD 348

  Fly   316 ETTKH-LPYQPQMLNCSERHDNVQPDGSTFRNYMRSLEIKEKTITGRIYFEGNVRKGFTFDVIEL 379
            :..|| ||                ..|.....::.:...  ..:||.:..:.|:.:..|...:.:
Zfish   349 KPNKHELP----------------SSGQYIARFLSNTSF--VGLTGPVIVQRNLSRVHTSHKVHI 395

  Fly   380 QT--------SGLVKVGTWEEGK-DFEFQRPPQAVNFNDIDDGSL------------VNKTFIVL 423
            .:        ...|.||:||.|: :.|.|...|..:.....:|.:            |:.:.:.:
Zfish   396 WSLRRDAVGQPTWVTVGSWEGGRLNVEEQGLWQGSSPRQRTEGQMGREGRRWRAGFPVSGSRLRV 460

  Fly   424 ISVATKPY----------------------ASLVESIDTLI-----GNNQF---------QGYGV 452
            :::...|:                      .:..|::|.|.     ||..|         .||.:
Zfish   461 VTLVEHPFVFTREVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKSFLPPDYSKCCYGYCI 525

  Fly   453 DLIKELADKLGFNF-TFRDGGNDYGSFNKTTNSTSGMLKEIVEGRADLAITDLTITSEREEVIDF 516
            ||:::|::.:.|.| .:..|...||:..  ....:|::.:::.|.||:|:|..:|.|.|.:||||
Zfish   526 DLLEKLSEDMNFEFDLYIVGDGKYGAVK--GGQWTGLVGDLLSGVADMAVTSFSINSARSKVIDF 588

  Fly   517 SIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIEWDNPYP 581
            :.||.:..:.||......|.| :.:||.|....:|:.:.:| |.::..|     |:..||.:|:.
Zfish   589 TSPFFSTSLGILVRSKDTAAP-IGAFMWPLHWSMWMGIFVA-LHITALF-----LTLYEWKSPFG 646

  Fly   582 CIEEPEELENQFTINNSLWFTTGALL-QQGSEIAPKALSTRTISAIWWFFTLIMVSSYTANLAAF 645
            ...........|:.:::|......|. :..|...||..:.|.:..:|..|.|:::|||||||||.
Zfish   647 MTPHGRNRVKVFSYSSALNLCYAILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAV 711

  Fly   646 LTIENPTSPINSVKD--LADNKDDVQYGAKRTGSTRNFFSTSEEPIYIKMNEYLNAHPEMLMENN 708
            :..|.....::.:.|  |.......::|..|..|..::...|    :.:|:||:....|   ...
Zfish   712 MVGEKTFEEVSGIHDAKLHHPSQGFRFGTVRESSAEDYMKKS----FPEMHEYMRKFNE---PTT 769

  Fly   709 QQGVDKVKSGTKY--AFLMESTSIEFNTV--RECNLTKVGDPLDEKGYGIAMVKNWPYRDKFNKA 769
            ..||..:|:....  ||:|:...:::...  .:|.|..||.|...:||||.:.:|.|.....::.
Zfish   770 PDGVATLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNISEF 834

  Fly   770 LLELQEQGVLARLKNKWWNEVGAG--VCSAKSDDDGPSELGVDNLSGIYVVLVIGSIISIIISIL 832
            :...:..|.:..|.:||:..|..|  |.:...    ..::|:.:.||::|:|.:|...:::    
Zfish   835 VSRYKSDGYMDMLHDKWYKVVPCGKRVFAVTE----TLQMGIRHFSGLFVLLCVGVTGALL---- 891

  Fly   833 CWCYFVYKKAKNYEVPFCDALAEE---FRIVIRFSENERPLK----SAQSIYSRSRNSSQSIESL 890
                               .||.|   :|:|:.....::..|    ::|.|:.....:.:.::..
Zfish   892 -------------------TLAGEHAFYRLVLPHIRRKQKFKYWLHTSQKIHRALNMTYEDVKRQ 937

  Fly   891 KTDSEENMPVE 901
            :.::|::..::
Zfish   938 RANTEKSCNIQ 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 83/408 (20%)
ANF_receptor 46..380 CDD:279440 73/370 (20%)
PBP2_iGluR_Kainate 417..788 CDD:270432 98/414 (24%)
Lig_chan 549..819 CDD:278489 66/278 (24%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 87/421 (21%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 97/410 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591313
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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