DRSC/TRiP Functional Genomics Resources

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Protein Alignment scrib and PIRL8

DIOPT Version :9

Sequence 1:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster
Sequence 2:NP_194335.2 Gene:PIRL8 / 828711 AraportID:AT4G26050 Length:383 Species:Arabidopsis thaliana


Alignment Length:317 Identity:98/317 - (30%)
Similarity:149/317 - (47%) Gaps:73/317 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 ENLVELDVSRNDIPDIPDDIKHLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLTTLPAD 147
            :|:..||:|...:..:.....:|.|:...|.|:|.|.|:|      ::|....||          
plant    57 QNIKTLDLSGMSLASLSASSINLASISKLDLSNNNIQKIP------ESLVARMLN---------- 105

  Fly   148 FGSLTQLESLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQR 212
                  |.:|:|:.|.||.||.:|..|:|||.|::..|.::.||..:.....|.||..:.|:|.|
plant   106 ------LWALDLQSNQLKTLPNSIGCLSKLKFLNVSGNYLQSLPKTIEDCRSLEELNANFNELTR 164

  Fly   213 LPPELGL-LTKLTYLDVSENRLEELPNEISGLVSLTDLDLAQNLLEALPDGIAKLSRLTILKLDQ 276
            ||..:|. ||.||.|.|:.|:|..|||.:|.|.||..||                :||       
plant   165 LPDAIGFELTNLTKLSVNSNKLVLLPNSVSYLTSLRVLD----------------ARL------- 206

  Fly   277 NRLQRLNDTLGNCENMQELILTENF--LSELPASIGQMTKLNNLNVDRNALEYLPLEIGQCANLG 339
            |||..|.:.|.|..|:|.|.:::||  |:.||.|:|.:..|..|:|..|.:..||..:| |    
plant   207 NRLSSLPEDLENLVNLQVLNVSQNFQHLTTLPYSVGLLISLVELDVSYNGITVLPDSLG-C---- 266

  Fly   340 VLSLRDNKLKKLPPELGNCTVLHVLDVSGNQLLYLPYSLVNLQLKAV--WLSENQSQ 394
               ||  :::|             |.|.||.|:..|:.:|...|:|:  ::||..::
plant   267 ---LR--RIQK-------------LSVEGNPLISPPFEVVEQGLEALKQYMSEKMTE 305

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
scribNP_001163746.1 LRR_RI 13..283 CDD:238064 63/200 (32%)
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566 4/11 (36%)
leucine-rich repeat 39..61 CDD:275380